FMO03241.5prime Sequence
1238 bp (783 high quality bases) assembled on 2008-07-09
> FMO03241.5prime
GTATAGCATACATAAAACGAAGTTATCAGTCCACATGGACAACAGCGTTA
TACTGATAGACGATTCACAAAACAGCGTGGTGATTGTGGATGACGACGTG
GAAGATGGGGAGCTGGAAGACGATGTGGTGTTCGTCTGTCCCGAAGAATT
GACCAAAAAAGAGATCGAACCTCCAACCGACGAAATTGAGGAAAAACACT
CAAATACATCGATTCAGGACACCACCGAGGAAGATGGGGATAGCCTGGTC
TTCGAAGTTCGATTTAACAAGGAAGCGCACTTCACCAGTCTGCAGCACCA
AGTGCTCGTCGCCTTGGAAGGCGCTTTTGCAAACAAGCAAATTGTGTTCC
GGGACAACCCACAGGAACTAATGATATCAGCCTTCGAAAGAAGTAGGACC
TTGCCAGAGGAGGAGCCCCAAGACCTCTTCCTGATCGACACTCAGCCAGC
GGCCAAGCTGAATGCCGCAAACGTTCCCTCCTACAAGCGCTGCAATGCCG
ACATCCTGGACGAGCAGACGGAAGAACGGAAAAAACTGAAGGCAGAGGCG
GTCAACAAGTGCTTTCGACCCAAGGCGCAGTCGTCGTGCTTCAATTGCGG
CGACACAGAGCACTCCCTACGCGACTGTACCAAGCCAAGAAACAATTCAA
GGATAACGCGCGCTCGCAAAAAGATGACCAGCCGCACAGAGCGCTATCAC
GTCGATACAGAGCAGCGGTTCGGTCACATACGCCCCGGCAAGATCAGCAC
TAAAGACGCGCCATGCCATGGGGCTACAGTCGCGGTCAGTTGCTCTTTAT
TTTCTACCGCATGCGAGTGCTGGGCTATCCGCCTGCTTGGCTGGAGGAGG
CAAAGGTGCAGAGCTCGTGCATAACTCTGTTTATGCAGATGGCTCGGAGG
TTACAAATCCGAGAGGAAGAGGGAGAGTCCAAAACTTTAATACGACGTCA
ACAAAATATTGGAGTATCCCGGCTTCAACGTCCAGACTAAGGCCACTGTT
TCAAGAATTTAAGCACCCCATGTACCTGTCAATCCCAGAGAGGCAGTCTA
AGGAATAACTTCTTTAAATTTCGATTGGGCGGAAATCACGTGATCGACGG
TTACAAGCGCAGAAGAGCTAGGGAAATTGACTGGCTCCAACGTACTTGGT
TCCCGTTCCCGAGCGAGGGCTGAACACGTTCCAGTGACTCCAACATGGAA
TTGAGAAGAGAGAGATAACTGAGCGCGAACCCTCTCGC
FMO03241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4622-RC | 2762 | CG4622-RC | 974..2143 | 35..1210 | 4670 | 94.3 | Plus |
| CG4622-RA | 1892 | CG4622-RA | 104..1273 | 35..1210 | 4670 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24534423..24535092 | 883..212 | 3140 | 98.5 | Minus |
| 2R | 25286936 | 2R | 24535141..24535324 | 218..35 | 890 | 98.9 | Minus |
| 2R | 25286936 | 2R | 24534255..24534363 | 995..891 | 320 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:25 has no hits.
FMO03241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:54 Download gff for
FMO03241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RB | 910..1873 | 35..995 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:27 Download gff for
FMO03241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 99..1067 | 27..995 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:48 Download gff for
FMO03241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4622-RA | 99..1067 | 27..995 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:48 Download gff for
FMO03241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24534255..24534363 | 891..995 | 93 | <- | Minus |
| 2R | 24534415..24535086 | 218..890 | 98 | <- | Minus |
| 2R | 24535142..24535328 | 24..217 | 94 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:27 Download gff for
FMO03241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20421778..20421886 | 891..995 | 93 | <- | Minus |
| arm_2R | 20421938..20422609 | 218..890 | 98 | <- | Minus |
| arm_2R | 20422665..20422851 | 24..217 | 94 | -> | Minus |
