Clone FMO03242 Report

Search the DGRC for FMO03242

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:32
Well:42
Vector:pMK33-CFH-BD
Associated Gene/Transcriptmio-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03242.5prime Sequence

824 bp (807 high quality bases) assembled on 2008-07-09

> FMO03242.5prime
TCGTATAGCATACATCAGACGAAGTTATCAGTCGACATGAGCGGCAATAC
ACACGGATTCAGCTGGTTTCCACATTTTCCCGACAAATTCGTATCCTGGG
GCCAGGAAATCCATTTATACGAAGTGCGCCGCAAAGATGATCACAGCCAA
AAAAGTCGCCTGCCTTATATATCCGTGAACTACCTCGCCAACGAGTCGCG
CTATCAATATGCCCGCTGCGTGGCCGCCTCCTACCACAGTGACCAGCCCA
TAATTGCAGTGGGTCTGGCGGATGGCAAAGTCGGGATTTGCAACTTCCGG
GACACCTACGACAGCAGCTGGGAGTACACACCGCGTCAGCAGCGCATGTG
CACCTGCCTCGCCTGGAACGAGCTGGATGCCAATATCCTGGCCATTGGAC
ACGATCGCCATCGAAATGACACCTGCATCACCATCTGGGACATTGAGCGT
GGAGTTCCCAAGGAGACGGCCAACTTCTTCGGCGTCGGCGAGTCGGCCAA
CTCCATTTGCTGGGATCGAAATCATCGCACGGTCATTGCGGGAATGAGCC
AGAAGATGATAAAGCTGTTCGATCTGAGGCAGAGTAACGCCACCCTGTCA
AAGCATTCAAACAAAGACAGTGCAGGGACTTTCCGTATCCCCCCAATGGC
ACTATCTCTGCAGCTATGTGGACTCGGTGATCACTCTGTGGGATCCGCGA
AATATCAAGAGTCCCCTCAGGCAGATTCAGTCCTCGAAAAACCATTTGCA
ATCGCTTGGTGTCCGACCAGGACAAGCCTGCTTTCCTCGCTGCACGCGAT
TCCTCCTACCATCACTCCTCTACG

FMO03242.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
mio-RA 2956 CG7074-RA 138..924 37..824 3765 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2217830..2218081 329..580 1260 100 Plus
2L 23513712 2L 2218174..2218403 581..809 930 96.5 Plus
2L 23513712 2L 2217598..2217771 155..328 870 100 Plus
2L 23513712 2L 2217427..2217546 37..156 585 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 22:45:33 has no hits.

FMO03242.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:35 Download gff for FMO03242.5prime
Subject Subject Range Query Range Percent Splice Strand
mio-RA 55..851 27..824 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:55 Download gff for FMO03242.5prime
Subject Subject Range Query Range Percent Splice Strand
mio-RA 128..924 27..824 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:05 Download gff for FMO03242.5prime
Subject Subject Range Query Range Percent Splice Strand
mio-RA 128..924 27..824 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:05 Download gff for FMO03242.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2217417..2217544 27..154 96 -> Plus
2L 2217598..2217771 155..328 100 -> Plus
2L 2217830..2218081 329..580 100 -> Plus
2L 2218174..2218416 581..824 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:55 Download gff for FMO03242.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2217417..2217544 27..154 96 -> Plus
arm_2L 2217598..2217771 155..328 100 -> Plus
arm_2L 2217830..2218081 329..580 100 -> Plus
arm_2L 2218174..2218416 581..824 97   Plus