FMO03244.5prime Sequence
1262 bp (974 high quality bases) assembled on 2008-07-09
> FMO03244.5prime
TTCGTATAGCATACATAAAAAGAAGTTATCAGTCGACATGTTTTCAATGG
ACTCTTTTGCCATGGACAAGGATGCGAAGTTGTACGAAGGAAATGCTCTA
TTCCGAAACCAGCCGTCGTACAAGGTGTTCAATAAATCCTTCGAGCACGT
GGACGATGCGCTGTACACATTGCTGAACGAAGTGGAGCCAGATGTACTGC
GAATGGAGCTCCAGGAAACGGGCGATCTCTTTAAGTCGTTCAATCGCAAC
TCGGCCTTGAGGGATCCGCGCAACAACGAGGTGCCACCGAAACCGACTCG
CGACCTCACCACCGCCAGTTCACTCTACAGCTTTCCCAATCCCCTGGAGC
AATACTCGGAGCTGAATCTTAAGCAACAGGCCGCCTGCATGCGAGTGCTC
CTCGCCTGGCAATGCAGTCAACCCGTCGATGAGCAGGACATCGTGGTGTG
GCAGGCAACGGAAAAGAAGCGATACAACGAGCAGCAGCGTGTGCAGAAAT
ACATACACGACCACGAGCAAGGACGCAAGGAAGTCATCTACGCGCCCATG
AAGAGCCTGGTGGCGGTCTACAGAAAGTGGTACGAACTGGGTGTTAAGAA
ACTTCAACAAACCTACCCCAATGACTCATATATGACCTTCTCCGGGCTGC
CACAGCTGCCCCAGTGCAGGAGTCTCAATGCTCAGACCGCCAGCATAGAG
CAGGTGGAGCTGGAGCGGATTGTCGGTCGGGTAAGACTCTTGCCAGAGGT
GGAAGTTCGCCATGAAGCCCTGCGGACATTAACGACTGCGCTTGGATCGC
TATGCGACGAGAGAAAACAAGGGCTCCTGTGCAGCTATTGCGGGAGGAAG
ACAAGGAACTGGAACTCGAAAGCTGGCAACGTCTTCGTGCTGCCCCTAAA
ACTCGCTGTTTATTGCTCCTTTACCACCGGATCCTATATTGACCTGCCCA
CCGAAATGGTTTCTCAACCCTAAGAGAATCGCCAACAGCAAGCAACAGTG
CATGGGAGTTCCAGTCGCCATTCCCCCCCCGCAACTGGTGGTGGCATACG
AAACAGTTTGAATCTTGAAACTGGCTTTATGGAGCCTATCTTTCACAAGC
CCGGGACAAGCAAGTGGCTGGAATTTTCAAATTATAAATGGAGCAGCCAA
GGAGGTGCTGATAGAACCTGTCTGTGATAGTATCATCGAATCTGCAATGG
ACTTACAGACCTCGGCCAATCGTATTCAGACCCAATCAGAAACACTATGT
AAGAAGATGTGC
FMO03244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ice2-RA | 2505 | CG10825-RA | 229..1399 | 38..1222 | 4995 | 96.1 | Plus |
| Ice2-RC | 2350 | CG10825-RC | 183..691 | 71..579 | 2545 | 100 | Plus |
| Ice2-RC | 2350 | CG10825-RC | 691..1244 | 655..1222 | 1910 | 92 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21130444..21131548 | 38..1158 | 4540 | 97 | Plus |
Blast to na_te.dros performed 2014-11-28 20:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 753..814 | 509..447 | 123 | 70.3 | Minus |
FMO03244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:56 Download gff for
FMO03244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10825-RA | 181..1316 | 23..1179 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:30 Download gff for
FMO03244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice2-RA | 181..1316 | 23..1179 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:55 Download gff for
FMO03244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ice2-RA | 219..1354 | 23..1179 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:55 Download gff for
FMO03244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21130434..21131544 | 23..1154 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:30 Download gff for
FMO03244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16956156..16957266 | 23..1154 | 96 | -> | Plus |
