FMO03247.5prime Sequence
1219 bp (943 high quality bases) assembled on 2008-07-09
> FMO03247.5prime
ATCAGTCGACATGGCAGCAAGTGTTGTTAAAACCCCCAAGTGCCCCAGAC
GAGGATCTGTCAAAGATGTGGCCCAAAACGCACCTAGAACAGCACCCACA
TCTAGCAAAGAGGCCAATTGGAACTGGTGGCTTCTCCTGGCTACCGTCTT
CCTGGTGACCTTCGCCACCCGCTTCTATAAGGTCACCGAGCCGGATCACA
TATGTTGGGATGAGACGCACTTTGGCAAGATGGGCAGTTGGTACATTAAC
AGAACCTTTTTTTTCGATGTCCATCCACCGCTAGGAAAGATGCTCATTGG
CCTCTCTGGCTACTTGACGGGCTACAATGGAACGTTTCCGTTTGAGAAGC
CAGGTGACAAGTACAACGAGACGCGGTACCAGGGCATGCGATATTTCTGC
ACCACACTGGGAGCTCTGATCATGCCCATGGGATTCGATACTGTCTACGA
TTTGACCCGTTCCCATGAAGCTGCCTTGCTTGCGGCTGCCTATCTTATTT
TCGATGTGGGGCTCTTGACCCTGAACCAGTACATCCTGCTGGACCCCATT
CTGTTATTCTTCATGATGGCCTCCGTCTGGGGCATGGTCAAGGTATCGAA
GTCCACGGCCTCCGGAGGATCGTACGGTCTACGCTGGTGGCTCTGGCTCT
TCCTCACCGGCACCATGTTGTCCTGCACGATTAGCGTTAAGTTCGTGGGT
CTGTTTGTGGTGCTGCTGGTCGGTCTGCATACAGCCACTGAACTGTGGCT
CATCCTCGGCGATTTGGGGCAGCCCATTTTGGAGACTGTTAAGCAGTTGG
CCTGCCGGGCCATCACCTGATTGTCTGGCCCGTTCTCCTCACATCCTGTT
CTTCTACATTCACCTGAGTGTCCTTAACCGCAGCGGAACGGAGATGGGTT
CTATAGTTCGGCCTTTCATTCAGGTTGATCGGCAACTCCCTATATATGCC
AGCATGCCCAGAGATTGTCGCTACGATCGCTAGTGACATCAAGACCACAG
ACGGGCGGAAGCTTACCTGCTCTCGCATCATCTCTGTATCCCAAGGATCT
GGCGCTAGGCAGCAGCAGGTAGCCACTTACACTCAGCATGACTAAAACCA
CATTGGCTAACTCAGGCCGACCAACAGCGGTTCCATAGGGCAGGTACGAG
ATCCTCTGACAGGACCTGCGGCTGAATCCATGGCGACATGAGATCTGGCA
TCCCCACACCGAAACTTGA
FMO03247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tw-RA | 2671 | CG12311-RA | 160..1285 | 11..1126 | 4990 | 97.1 | Plus |
| tw-RB | 2840 | CG12311-RB | 160..1285 | 11..1126 | 4990 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 785716..786305 | 503..1082 | 2175 | 95.9 | Plus |
| X | 23542271 | X | 784905..785015 | 11..121 | 555 | 100 | Plus |
| X | 23542271 | X | 785547..785655 | 395..503 | 545 | 100 | Plus |
| X | 23542271 | X | 785386..785492 | 288..394 | 535 | 100 | Plus |
| X | 23542271 | X | 785233..785318 | 204..289 | 430 | 100 | Plus |
| X | 23542271 | X | 785089..785173 | 120..204 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:36 has no hits.
FMO03247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:33 Download gff for
FMO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tw-RB | 160..1246 | 11..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:42 Download gff for
FMO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tw-RB | 160..1246 | 11..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:42 Download gff for
FMO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 784905..785014 | 11..120 | 100 | -> | Plus |
| X | 785090..785173 | 121..204 | 100 | -> | Plus |
| X | 785234..785318 | 205..289 | 100 | -> | Plus |
| X | 785388..785492 | 290..394 | 100 | -> | Plus |
| X | 785547..785655 | 395..503 | 100 | -> | Plus |
| X | 785717..786293 | 504..1070 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:33 Download gff for
FMO03247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 678938..679047 | 11..120 | 100 | -> | Plus |
| arm_X | 679123..679206 | 121..204 | 100 | -> | Plus |
| arm_X | 679267..679351 | 205..289 | 100 | -> | Plus |
| arm_X | 679421..679525 | 290..394 | 100 | -> | Plus |
| arm_X | 679580..679688 | 395..503 | 100 | -> | Plus |
| arm_X | 679750..680326 | 504..1070 | 96 | == | Plus |
