FMO03248.5prime Sequence
735 bp (624 high quality bases) assembled on 2008-07-09
> FMO03248.5prime
TATAGCATCTTAATACAAACTTATCAGTCGACATGCAGAGCTACGGCCCC
CGAGCCCAGACAGCTCCGGCCGTCAAGCGCCGCACGGACAGCTACGAGGC
TGCCCAGCAACAGCAGCAGTCGCCGGAGAGCGACGAGGAGTACGTGAACA
CCAGGATACTGCGGCGCCAAGTGCAGCTGCAGTCCACTCCGGTGGCCCCG
GTGGTGCCCATGCCCATATCCGCCGGTAGTGGCACTGCCCCACCCTCCGT
GGATGGCCGCGAGGAGCAGCCCGAATTCCCCGGATCCTCGGCTGCATCTT
ACCAGGAGGAGCGAATGCGCAGGAAGCTTCAGTTCTTCTTTATGAACCCC
ATTGAAAAATGGCAGGCCAAGCGGAAATTTCCGTACAAGTTCGTTGTGCA
GATTGTAAAAATCTTTCTGGTGACGATGCAATTGTGCCTTTTTGCCCACT
CGCGGTATAACCACATCAACTACACGGGTGATAACCGATTTGCCTTCTCA
CATCTATTCCTGCGCGGCTGGGATTCTTCCCGGGAGGTGGAGAGTTATCC
GCCTGCTGTGGGTCCCTTTGCTCTATACCTCAAATCGGAGTTCTTCAACA
CTGTGCAGAATGCAGTCAATGGCTACGCGAATGTAAACCGATCTATTGGA
CCATACGACTACCCGACACCCAATAACACAATGCCGCCACTATAGCTTTG
CCTTGCAAAACTATAGAAAGGGCACCATATTTGGC
FMO03248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trpml-RA | 3070 | CG8743-RA | 256..962 | 28..735 | 3365 | 98.4 | Plus |
| CG42638-RA | 3070 | CG42638-RA | 256..962 | 28..735 | 3365 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19717700..19718073 | 401..28 | 1825 | 99.2 | Minus |
| 3L | 28110227 | 3L | 19749116..19749489 | 401..28 | 1825 | 99.2 | Minus |
| 3L | 28110227 | 3L | 19716666..19717000 | 735..400 | 1525 | 97.6 | Minus |
| 3L | 28110227 | 3L | 19748082..19748416 | 735..400 | 1525 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:51 has no hits.
FMO03248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:53 Download gff for
FMO03248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8743-RA | 276..984 | 25..735 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:16 Download gff for
FMO03248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 254..962 | 25..735 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:27 Download gff for
FMO03248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42638-RA | 254..962 | 25..735 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:27 Download gff for
FMO03248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19716666..19716998 | 402..735 | 97 | <- | Minus |
| 3L | 19717700..19718075 | 25..401 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:16 Download gff for
FMO03248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19709766..19710098 | 402..735 | 97 | <- | Minus |
| arm_3L | 19710800..19711175 | 25..401 | 98 | | Minus |
