FMO03250.5prime Sequence
866 bp (794 high quality bases) assembled on 2008-07-09
> FMO03250.5prime
ATAGCATACATAAAACGAAGTTATCAGTCGACATGGAAACCTCGAGCTCC
AGTCCAGTAAAGCCCAGGAGAAAAGACAAGGACGAAGATAAGTTCCGGAT
CGGGGCTACACTAGCATTTATCGTGGTCATCATTGGAATTGGCGTGCCCA
TGTGGTGGCGCACCACCACAGTCTACAGAGTCAATTTGCCCTCGACGGAA
ATTTTGAGTCTGAGTAAAATTCCGATCAAAACGGCTGTGCAGGTGGCCAT
CTACACACAACAGACCAGTCGTGGCCAGTTGCTCATCGCCGAACTGCAGA
ACGCCTTCAGCGACAATGAAATATGGTCTGTGGAATTCAAGCAGCTATCT
CCTACGCCAATGACCCAGGAAGCACACACGCCAGCTGCTCTGGAGAAGCT
GTTGCTGGAGAACCATGTCCAGAGCGTTGGCGACTTCATGTTCATCGAGT
GGCCCAAACTGCAGGAGGAGCTGCTACTAACCACCGAAAGATCGGCACTG
ATGCGAAGTGATACACCTTCCAACAAAATCGCCCAGCTCCTGCACGCCAA
GATCCTGCAGACGTATCGCATAAAATCAAATTTTAAGTACCGATGAGCGG
ATGGGCGCCAAGTCGGAAGCTCCGCAACCAGCCTACGATGTGATTGTCTC
TGTCCTGAATCCGAAACCGAGACTCACCCATGCCAAGTGGAACATAGCAA
TGGCTGTGAAGACTTACATTGAGCCCCTGGTTGGCTAAGGTGTCCGGTGT
TTTCCAATTACACGGTGCGATCGCAGTGGAAATTCCTGGGTGGCCATCGA
GGCTTGATCTCAAGCAAGGTGCGCGACCAGAGCAAATTGGGGCGACACTA
CGCCCTCCAGGAAACG
FMO03250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PIG-S-RC | 1764 | CG44255-RC | 101..928 | 32..865 | 3990 | 99 | Plus |
| CG44254-RA | 1826 | CG44254-RA | 101..158 | 32..89 | 290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24915193..24915391 | 516..318 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 24914506..24914700 | 712..517 | 930 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24915447..24915589 | 318..176 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 24914297..24914444 | 865..713 | 485 | 95.4 | Minus |
| 3R | 32079331 | 3R | 24915645..24915737 | 178..86 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 24917703..24917764 | 93..32 | 295 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:43 has no hits.
FMO03250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:03 Download gff for
FMO03250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31120-RB | 67..900 | 25..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:36 Download gff for
FMO03250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-S-RC | 95..928 | 25..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:40 Download gff for
FMO03250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PIG-S-RC | 95..928 | 25..866 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:40 Download gff for
FMO03250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24915645..24915735 | 88..178 | 100 | <- | Minus |
| 3R | 24917709..24917767 | 31..87 | 96 | <- | Minus |
| 3R | 24914295..24914444 | 713..866 | 94 | <- | Minus |
| 3R | 24914506..24914700 | 517..712 | 99 | <- | Minus |
| 3R | 24915193..24915390 | 319..516 | 100 | <- | Minus |
| 3R | 24915447..24915586 | 179..318 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:36 Download gff for
FMO03250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20740017..20740166 | 713..866 | 94 | <- | Minus |
| arm_3R | 20740228..20740422 | 517..712 | 99 | <- | Minus |
| arm_3R | 20740915..20741112 | 319..516 | 100 | <- | Minus |
| arm_3R | 20741169..20741308 | 179..318 | 100 | <- | Minus |
| arm_3R | 20741367..20741457 | 88..178 | 100 | <- | Minus |
| arm_3R | 20743431..20743489 | 31..87 | 96 | <- | Minus |
