FMO03251.5prime Sequence
1227 bp (993 high quality bases) assembled on 2008-07-09
> FMO03251.5prime
GTATAGCATACATAAAACAAAGTTATCAGTCGACATGAGCGACGAAGGTG
GCTGTAAATCGGAGCAGTTAGAGAAATCCGAAGAAGCGGAGGAAAAAAAG
GGGGACGCAGAAGGACAGGAAGCGAAAGCTCCAATTCTCAACCCCATTTC
AGTCCCAGAAGTTGATGACAAGCCGACGGAAAATAAACCCCAATCGGATA
ATCACGCGGACAAAACGGACGAAACTCCATCTCAGGACTTTGCCGCCTAC
GAGGAGCACATGACCTATGGAGCGGACGGCGGGGCTATATACACGGATCC
CAGCACGAAGCAGAAATACAAGTGGTGCGCCACCGGAAACAATTGGCAAC
CCTTAGGCGTTGATGAAGATGTTGATGGACAGGCTGAAGATCCCTACGAA
AACGAGCACTACAAGTGGTGTCCCAAATCCCAACAGTGGTTGCCAAAAAA
ACAGGAAACTGAAACGGAGCACTACAAGTGGGATGACGAGCAAAAGAAGT
GGGTGCCCAAGCACCCGAACCCTGGCCAGGAAGGGGTTTGCGGTGTGGAT
GAGCATGGCGAGCGCACTTACACCGACAAGGATGGCGTCGAGTTCTTTTG
GGATGCAACCAAGAGTGCTTGGTTCCCCAAGATCGATGATGATTTCATGG
CTCGCTACCAAATGAACTATGGATTTATTGACAACACATCAGCGGGGGAG
AAAGAGAAGGCTGAAAAAGGAGGCGGCTGAGGCCAAGAGAAAGGAGGAGG
AACTCAAGCGTATGACGGCAGAGGCGGAAGCTGCTATGTCTAGAGACAAT
CCAGCATCCAGCGCTGCAGTGCCCACTGGCCAGCGAAAGGCCCAGGAGCC
CCCAAAATGGTTCGAAATGGATCCATTGCAGAACACCAAGGTGTATGTCT
CCCATTTGCCCCTGGACATTACTATGGATGAGTTTGCCGATCTGATGGCA
AGGTGTGGCATGGTTATGGAGAAGATCCGCAAACGCAGAATTTCAAGCCT
GAAACCTATATGCCGAAAAGGATGGACCAATCAAGGGCGAATGGCTTGTG
GTGAATAACTCAAGGTGGAAAGTGTCCATCTGGCGCTGAAATTAGACGCA
GTAAATCTTGCTGTCCAAATCCGTTCCAAAGGCTTCAGTTCCAATGCTGA
GATACATCCCGCTTGAGCTATCCAGATAGGGCAAAAGAAATTGCCAAAGA
TGAGGGAAAGCTTATTGTGATGTGGCG
FMO03251.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-RA | 2287 | CG6049-RA | 304..1353 | 35..1091 | 4900 | 98.1 | Plus |
| barc-RC | 2272 | CG6049-RC | 289..1338 | 35..1091 | 4900 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21424718..21425537 | 855..35 | 4040 | 99.8 | Minus |
| 3L | 28110227 | 3L | 21424476..21424656 | 1040..856 | 610 | 92.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:54 has no hits.
FMO03251.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:04 Download gff for
FMO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-RA | 337..1406 | 35..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:56 Download gff for
FMO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 289..1358 | 35..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:22 Download gff for
FMO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 289..1358 | 35..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:22 Download gff for
FMO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21424454..21424656 | 856..1064 | 92 | <- | Minus |
| 3L | 21424718..21425537 | 35..855 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:56 Download gff for
FMO03251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21417554..21417756 | 856..1064 | 92 | <- | Minus |
| arm_3L | 21417818..21418637 | 35..855 | 99 | | Minus |
