FMO03252.5prime Sequence
1225 bp (1044 high quality bases) assembled on 2008-07-09
> FMO03252.5prime
TTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGATCGCAGTC
TGGACTCTATTGGCAGCTGTTCACTGGATGTAGACGCCGACTCCTCCGAT
ATATCAGATACCAGTGGGAGCCTGAACTTTCCAACGCCGGTCTCAGTAAG
GGACATAACACGCGAATTTACTGCCAACCTTCGGGAGCGCTGTGTGCCTA
ACTTGCCTCCCCAGCCTCAGCACAAAACCCCTGCCTACGTTGAATCCAGG
TCGTCAGAGCTGGAGCACATGGTGCTGTCACCTGCAATTGTGGAGTGCGA
CCAAGAGCCGAGCTCCAATGATTTTGACGAGACTTCTGCAGAAAATTCAC
AAGAAGCTCCCGAAAAGAAGCCCAGCTATTTAAACCTGGCTTGCTGCGTC
AACGGTTATTCCAACCTTACCACCTACGACTCCAAGATTCGGCAGGACAT
AAACAAGTCACGTGAGGTTTCCCCGATTCGTCCCTCCACCAGCAGTCTAC
AGTACTGCAAACGCAACCACTTTCTAGCGACACCAACTCTGCACAGCATG
CCTTCTCCGGCCACCAAGTGCAAACCCATCGAGCCTAACAACAACAGCAA
CGACAGTAGCGGGAATTTTAGTTCGGGTTCTGGTCACAGCAATGGAAATG
GCAGTTTTATCAAGCAACGGGTGGAGCGACTTTACGGGCCGGGTGCATTA
GCCCAGGGTTTCTACAGCCCCAAAAAGCACGGCCAGTCACCATCGAATGC
TGCAGGGCGATCGGAAAGGGGGCAGGTGGAGATCGACTCTCTACAAGGCT
CCGAACTGGCTCGGAAATTCAAGCAGCTCTCCCCCAGTAAAGACTATGGG
GAGTTTCGAAAAAAAATGCAGAAGAAGTGTTCTCAGAGTACAAACGGCGA
GGATAAGACGAGTCGTTGCATCTCCAAGGGCTTAACCGGAGATCTTGACC
TGCCCGTGTTTAGGCACCTTAGTCAAGAGTTCCGCGCCCAGTTGCCTACT
GGTGTCACCAAAAAGGGGTGCTCCTCGATCTTGCATGGCTCCTGAATTAC
TGCCTGTAAATACGAGTCCAGTCAGACCATGGTCCACAGATGAGTAAACA
CGAATCCACAAATGGACAACCTAGCCTCAAGAATACTCCACCTTCATATT
CTGTTGACCTGTTGTAGGATGGAAATTCTTCCTGAAATATCTTAAAAGGG
AACACAGGCGCGCTCCTTCTTTGAG
FMO03252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vlc-RI | 2425 | CG8390-RI | 87..1268 | 37..1204 | 5110 | 96.6 | Plus |
| vlc-RH | 2369 | CG8390-RH | 31..1212 | 37..1204 | 5110 | 96.6 | Plus |
| vlc-RG | 2487 | CG8390-RG | 149..1330 | 37..1204 | 5110 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5703048..5704026 | 105..1085 | 4465 | 98.4 | Plus |
| 2R | 25286936 | 2R | 5702877..5702947 | 37..107 | 355 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5601..5673 | 538..610 | 122 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2420 | 494..615 | 118 | 62.9 | Plus |
FMO03252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:57 Download gff for
FMO03252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RD | 84..1266 | 29..1198 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:24 Download gff for
FMO03252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RG | 141..1323 | 29..1198 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:07 Download gff for
FMO03252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RG | 141..1323 | 29..1198 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:07 Download gff for
FMO03252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5702869..5702947 | 29..107 | 96 | -> | Plus |
| 2R | 5703051..5704154 | 108..1198 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:24 Download gff for
FMO03252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1590374..1590452 | 29..107 | 96 | -> | Plus |
| arm_2R | 1590556..1591659 | 108..1198 | 96 | | Plus |
