FMO03253.5prime Sequence
1250 bp (904 high quality bases) assembled on 2008-07-09
> FMO03253.5prime
TATAGCATACATAAAACAAAGTTATCAGTCGACATGGCAGCCGGTGTCTT
CAAGAGTTTTATGCGCGACTTCTTTGCGGTGAAATACGATGAGCAGCGAA
ATGATCCGCAAGCGGAACGACTGGATGGCAACGGACGACTGTATCCCAAC
TGCTCGTCGGATGTGTGGCTGCGATCCTGCGAGCGGGAGATAGTTGATCC
CATTGAGGGCCATCACAGCGGGCACATTCCCAAATGGATATGCGGTAGTC
TGTTGCGCAATGGACCCGGCAGCTGGAAGGTGGGCGACATGACCTTCGGC
CATCTGTTCGACTGCTCCGCCCTGCTGCACCGATTTGCCATTCGGAATGG
ACGCGTCACCTACCAGAATCGCTTCGTGGACACGGAAACACTGCGAAAGA
ATCGCTCTGCCCAGCGGATTGTGGTCACGGAGTTTGGCACAGCTGCTGTT
CCGGATCCCTGTCACTCGATCTTCGATAGATTTGCGGCCATTTTTCGACC
GGATAGTGGAACGGATAACTCGATGATTTCCATATATCCTTTCGGGGATC
AGTATTACACATTTACGGAGACGCCTTTTATGCATAGAATAAATCCCTGC
ACTTTGGCCACCGAAGCACGAATCTGCACCACCGACTTCGTGGGCGTGGT
GAACCACACATCGCATCCGCATGTTCTTCCCAGTGGCACTGTCTACAACC
TGGGCACCACAATGACCAGATCTGGACCGGCATACACTATACTTAGTTTC
CCGCACGGCGAGCAGATGTTCGAGGATGCTCATGTGGTGGCCACACTGCC
GTGCCGCTGGAAACTGCATCCCGGGTTATATGCACACCTTCGGCTTAACG
GATCACTACTTTGTGATTGTGGAGCAGCCGTTGTCCGTTTTCGCTTACGG
AGTATATCAAAGCCCAGCTAGGTGGAAAGAATTTTATCGGCGTGTCTCAA
GTGGTTCGAGAACGACCGACACTTATTTCACCCTTATAGATCGGGCTTTC
CGGCAAACTGGTGCAAACCTACGATTCGAAAGCCTTCTTCTACCTGCCAT
CATCACTGCTTTGAACGGGATGGCACGTGGTGGGGGACATTGCCCGCCTA
CAGATCCGAGATGAATCTACTCTGCCATGTATCTTGGAGGCCATTGCCCA
ATTGCCAACGAAATTCCCAATTAGGCTACCTTCTTCCGGAACCTTGTGAA
AATCGTCCGTGCCCTGGGGCACAAATTCTCTCACGCGCAGAGCAATTCGC
FMO03253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaB-RA | 2164 | CG9347-RA | 137..1281 | 34..1185 | 5045 | 96.8 | Plus |
| f-cup-RF | 2885 | CG9611-RF | 92..138 | 80..34 | 235 | 100 | Minus |
| f-cup-RD | 2532 | CG9611-RD | 92..138 | 80..34 | 235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13701068..13701577 | 78..587 | 2550 | 100 | Plus |
| 3R | 32079331 | 3R | 13701632..13702136 | 585..1091 | 1950 | 96.7 | Plus |
| 3R | 32079331 | 3R | 13700701..13700747 | 34..80 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:31 has no hits.
FMO03253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:38 Download gff for
FMO03253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 116..1153 | 34..1074 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:59 Download gff for
FMO03253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 137..1174 | 34..1074 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:01 Download gff for
FMO03253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 137..1174 | 34..1074 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:01 Download gff for
FMO03253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13700698..13700745 | 28..78 | 94 | -> | Plus |
| 3R | 13701069..13701577 | 79..587 | 100 | -> | Plus |
| 3R | 13701635..13702118 | 588..1074 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:59 Download gff for
FMO03253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9526420..9526467 | 28..78 | 94 | -> | Plus |
| arm_3R | 9526791..9527299 | 79..587 | 100 | -> | Plus |
| arm_3R | 9527357..9527840 | 588..1074 | 96 | == | Plus |
