FMO03254.5prime Sequence
1251 bp (965 high quality bases) assembled on 2008-07-09
> FMO03254.5prime
GCATACATTAAACGAAGTTATCAGTCGACATGTCGGGGGCTGGAGAACAC
TCAGATGAAGAGTCCTATGGAGAGGAGTCCTTCGAGGAGGACTCGGAGTC
GGAGGTGGAGGTGGAGGAAGAAGAGATTGAGTATATTGAGCCAGAGGAGT
CAAAACCAAGTGACGCTCTTCTGTTGGGGGAGAGCGACACCCAAAGCGAG
AGCGATGTGAAAGAAGAGTTTCTTAGCGGCAACCCACACGCCCGTCGCTA
TTTGGGCGCCCGAGTGGTGTCCTACCTGAGTTCCTCCTCTGACGACGAAA
GCCAAGTGGTCATCACCAAGACGGTAGCCGAGGTAAATCAACTAAGTCTG
CGAGTGGACACGCCTCCGGAGGATGAGACGCCCTCGGTGCGCACTCTGAT
GCCAGGCAGTGCCCATTCTCGGGTTAAGGATGAGGACGAGGCTGAAGACG
AGGATGATGACGAAGGTGATGGCGAAAATGATAACGATAATGAGGACGAG
AATGATGACGAGGATGCTGAAGTCGAGGAAATCGAAGAAGAGGAGGAAGA
AATTCCAGGAGACGAAGACGACGCCCAAAGCGATGGATCCATGGGTCGTC
AATCCGCCGACGACAGCGACGAGGAGGAGGGCACGGATGTGGAAGTGGAG
CAGCTGGAGGAGGACGAACCAATTGTAACAGCTGTGTGCAAAAAGACGGT
CCAGAAGGAGTTACCACCGCCCCAGAAGGACATTGTTTCGCTGGTCGATG
CCAGTGATAACAGTAGTGAGCACAGTGTGGTCACCATGTGTGCATCAAGA
GACGAAACAGACAACACCTTTGGTGAAGTATCCTAGATTACGAAAGCAGC
AACCACTTTACTGCTAAGATTCGCAATCGCTAAAAGAGCAGGAAGAACCG
GAAGAAACGGGAACAACTCCGAAGAAAAATCAAACAGAAGAACACATGCC
ACATCACAGCCCGAATTCTGGCGAGGGTTCGGGTACCTGGAGCAGCAGAA
TGACCCAAATGTCCGGACTGATCATGAAGTCATTTCCAAGATCATATGGA
GGAAGCGCCAATAGCCAGGCTTCCGAGCAGCTGGCATGACAACGGAGAGT
TTGCAGCCACAAATGAACAGGCGCGGGACCTGATCCAGAATGTCCTCGAT
GAGACGAACGAACATTATGACCCAGTCTAGAACCTTGGGTGAGAAAATCC
CCCTGACAAGTGGGAGAGGGGACGTCTCTCAGAGAGGATCATATACTTCA
T
FMO03254.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hmw-RA | 2041 | CG7669-RA | 133..1298 | 30..1203 | 4835 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18362402..18363016 | 234..849 | 3015 | 99.7 | Plus |
| 3R | 32079331 | 3R | 18362126..18362329 | 30..233 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 18363069..18363341 | 847..1127 | 445 | 87 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:27 has no hits.
FMO03254.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:58 Download gff for
FMO03254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-RA | 129..1182 | 22..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:15 Download gff for
FMO03254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7669-RA | 129..1182 | 22..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:25 Download gff for
FMO03254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hmw-RA | 129..1182 | 22..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:25 Download gff for
FMO03254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18362122..18362329 | 22..233 | 98 | -> | Plus |
| 3R | 18362402..18363016 | 234..849 | 99 | -> | Plus |
| 3R | 18363072..18363250 | 850..1034 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:15 Download gff for
FMO03254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14187844..14188051 | 22..233 | 98 | -> | Plus |
| arm_3R | 14188124..14188738 | 234..849 | 99 | -> | Plus |
| arm_3R | 14188794..14188972 | 850..1034 | 92 | == | Plus |
