Clone FMO03255 Report

Search the DGRC for FMO03255

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:32
Well:55
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7470-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03255.5prime Sequence

458 bp (457 high quality bases) assembled on 2008-07-09

> FMO03255.5prime
TAGCATACATAAAAAGAAGTTATCAGTCGACATGCTGCAAAACAGTTTCC
CATTGGCCCAGAGCCTTCGAAACGGCTTCTACAGAAACGCCTGGCGAGCG
TTCAGCTCCCACGGACCCCGGCAGCCTCTGGTTTCGCCGGAGCGGCGCTT
GGAAAAGGCGCATCCAACCTTCACGGAAAGGAGTCAGTTGAAGTACGCCC
GGAGGCTGGTGGTCAAGTTGGGCAGTGCAGTCATTACTCGAGAGGACAAC
CATGGACTAGCCCTCGGCCGTCTGGCCTCTATTGTGGAGCAGGTTGCCGA
GTGCCATTTGGAAGGACGTGAAGTGATGATGGTCACCAGCGGAGCGGTGG
CCTTTGGAAAGCAGAAGCTCGCCCAGGAGCTGCTCATGTCGCTGTCCATG
CGCGAGACACTAAACCCAAAAGATAGCAAAGAGTTTGACGGCGCTACGCT
GGAACCGC

FMO03255.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7470-RB 4686 CG7470-RB 146..572 32..458 2075 99.1 Plus
CG7470-RA 2868 CG7470-RA 146..572 32..458 2075 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21976295..21976461 128..294 835 100 Plus
3L 28110227 3L 21976582..21976724 291..433 715 100 Plus
3L 28110227 3L 21972147..21972241 32..126 430 96.8 Plus
Blast to na_te.dros performed on 2014-11-28 19:41:05 has no hits.

FMO03255.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:06 Download gff for FMO03255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 147..573 32..458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:35 Download gff for FMO03255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 146..572 32..458 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:15 Download gff for FMO03255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7470-RA 146..572 32..458 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:15 Download gff for FMO03255.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21972147..21972242 32..127 95 -> Plus
3L 21976295..21976459 128..292 100 -> Plus
3L 21976584..21976724 293..433 100 -> Plus
3L 21976786..21976810 434..458 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:35 Download gff for FMO03255.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21965247..21965342 32..127 95 -> Plus
arm_3L 21969395..21969559 128..292 100 -> Plus
arm_3L 21969684..21969824 293..433 100 -> Plus
arm_3L 21969886..21969910 434..458 100   Plus