FMO03257.5prime Sequence
1236 bp (873 high quality bases) assembled on 2008-07-09
> FMO03257.5prime
TCGTATAGCATACATTAGACGAAGTTATCAGTCGACATGGAGAGCTTTGC
GCCGGAATTACTTTGGATGGTAGTCATCGGATTCCTAATCGCCTTCGTAC
TCGCCTTTGGCATCGGTGCCAACGACGTGGCCAACTCATTTGGCACCAGT
GTCGGCTCCGGTGTTCTGACCATCCGGCAGGCATGCGTGCTGGCCACCAT
TTGCGAAATTTCGGGTGCCGTTTTGATTGGCTACAAGGTATCGGATACCA
TGCGCAAGGGAATCCTAGAAGTTGGCCTATACGAGGGCGCCGAGGAGGTT
CTGATGCTGGGCTGCGTGGCCGCATTGGCCAGTAGCGCCGTTTGGCTGCT
GGTGGCCACCTTTTTGAAGTTGCCTATTTCGGGAACGCACAGTATCGTTG
GCTCTACCATTGGATTTTCGCTAGTGGCGCGCGGTGTACAGGGCCTAAAG
TGGTCTACTTTGGGCACAATCGTCGGATCGTGGTTCATCTCACCGGTGCT
GAGTGGAATTGTGAGCATTCTGCTCTTCCTGGCCATTCGTCGTTTCATCC
TACGTGCCCAGGAGCCGCTCAAGGCCGGATTTCGATCGCTGCCCATCTTC
TACGGTGTAACGTTCTTCATCAACGTTATCAGCGTTGTGTTGGACGGGCC
CAAGCTGCTCTACATGGACAACATACCCCACTTTGGATAGCACTGACCCG
CCAGTTTTGGTCTCTCTTTGCTGGTGGCATTGCTTACGCAATTGGTAGTG
GTGCCTTTGCAGCGGCGCAAGATTGCCAAACGATTGCGGGCCGAGAATCC
TGTCAAGTTTAATTTCGAGGACTCCGTGGAATCTTCCCCGTCGGGAAAGC
CCAAGAAGCAGCGTCGTCCCCTGCCGCTGGTTAGCGAAAGAAAGCCACTG
CCTGCCTTCGCAGAAATAATCCGAGCTGGTCTCGTTGAGCGACAACTCGC
CGAGGACTTAAGTTGGCTCCATCGAATAGCCGGCCAGACAACATGCCCTG
GGGAGAAGTACCAAGATCGATCGCACTGATCAAAAAGGCTGAGATCTGTC
TGGCAAGGCTAGCTGACAACCGATCTGACAATTACCAATCTGAAATTTAT
TCGACAAGCAGCCCTACAACTGCGACAAGCCAAATGAACGCAGTGAGGAA
GGCCTTCCAGCGATCATGCCCAAGATGGAACGAATTACGACGACAAACTC
TCATATGTCCCAGCGAACATTGGCATACTCGGCATG
FMO03257.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42575-RB | 2953 | CG42575-RB | 287..1370 | 37..1112 | 4705 | 96.7 | Plus |
| CG42575-RA | 3715 | CG7628-RA | 1049..2132 | 37..1112 | 4705 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11129952..11130549 | 229..829 | 2860 | 99.2 | Plus |
| 3L | 28110227 | 3L | 11129688..11129881 | 37..230 | 970 | 100 | Plus |
| 3L | 28110227 | 3L | 11132647..11132791 | 829..972 | 540 | 94.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:52:12 has no hits.
FMO03257.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:00 Download gff for
FMO03257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7628-RA | 331..1399 | 28..1087 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:16 Download gff for
FMO03257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42575-RA | 1040..2108 | 28..1087 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:35 Download gff for
FMO03257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42575-RA | 1040..2108 | 28..1087 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:35 Download gff for
FMO03257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11129679..11129880 | 28..229 | 98 | -> | Plus |
| 3L | 11129953..11130549 | 230..829 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:16 Download gff for
FMO03257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11122779..11122980 | 28..229 | 98 | -> | Plus |
| arm_3L | 11123053..11123649 | 230..829 | 99 | -> | Plus |
