FMO03260.5prime Sequence
777 bp (383 high quality bases) assembled on 2008-07-09
> FMO03260.5prime
GCATAATAAAACGAAGTTATCAGTCGACATGGAAAGTCCCTGTGAATCCG
AAAGTTCGCTGGACGGTGGCACCATGCTGCCACCAAGCCCAGTTTCCCGG
GAGCAACTCCATAAGAGGATCTAATCGCTCACCCAGCAGAACAAGGTGCT
GAAAGCCGAACTGGATACCTTCAAGACCAAGTGCAAAGTGGTGCAAGAGG
AGAATCGCTGCCTCAAGCAAGCCTCAGTCATCATTCAAGCCAAAGCCGAG
CAGGAGGAAGAATACATCTCAAACACGCTGCTAAAAAAGATTCAGGCCCT
CAAAAAGGATAAGGAGACTCTGGCGCACCACTACGAGCGCGAGGAGGAGT
GTCTGACCAACGATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGGAGAAG
TGCAAGCTGGAGCAGACCCTTGAGCAGGATCAGGAGTGCCTCGTCAACAA
TCTTATGCGTAAGATTGACAAGCTCCAGGCGGAGACGGACAACCACCAGA
CCAATCTCGAGCAGCTGCACCGCGAAATGGTCGAGTTGGAGAACACGCTT
GAGCAGGAACAGGAAGCTCTTGTAAACAAGCTGTGGAAGCGCATGGACAA
ACTTGAGACCGAAAGCGTTCGCTGCAAATCAAGCTGGATCCTCCGGTTTC
CAGATCCGACTACGCCGCGAGACATCACAAACAACGCCCATGCAATGGGT
GGCGATACTGGCCACCATTTTGAGTGCTCATATCCAGATCCTGCGCTCCG
AAGTGCTTTCCTATCACTCCGACCTGG
FMO03260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 2603 | CG6664-RC | 440..1188 | 28..777 | 3335 | 96.7 | Plus |
| CG6664-RB | 2552 | CG6664-RB | 389..1137 | 28..777 | 3335 | 96.7 | Plus |
| CG6664-RA | 2482 | CG6664-RA | 319..1067 | 28..777 | 3335 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17014364..17014904 | 777..236 | 2250 | 95.6 | Minus |
| 3L | 28110227 | 3L | 17015140..17015257 | 145..28 | 560 | 98.3 | Minus |
| 3L | 28110227 | 3L | 17014987..17015077 | 235..145 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:54 has no hits.
FMO03260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:32 Download gff for
FMO03260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 437..1196 | 15..777 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:30 Download gff for
FMO03260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RB | 380..1137 | 17..777 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:26 Download gff for
FMO03260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 308..1067 | 15..777 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:26 Download gff for
FMO03260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17014364..17014904 | 236..777 | 95 | <- | Minus |
| 3L | 17014987..17015077 | 145..235 | 100 | <- | Minus |
| 3L | 17015141..17015266 | 16..144 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:30 Download gff for
FMO03260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17007464..17008004 | 236..777 | 95 | <- | Minus |
| arm_3L | 17008087..17008177 | 145..235 | 100 | <- | Minus |
| arm_3L | 17008241..17008366 | 16..144 | 93 | <- | Minus |
