FMO03261.5prime Sequence
1228 bp (959 high quality bases) assembled on 2008-07-09
> FMO03261.5prime
CGTATAGCATACATAATACGAAGTTATCAGTCGACATGTGTGGTTGTTGG
AAGGTTTTCTGCCTGCTGGCGCTACTTTCCCTGGTCGCTTTCAGCGATTC
CCTGCGAATTCTGGGTCTGTTTCCGCACCCGGCCATCAGTCACTTCAAGT
TCTTTCACCCAATCATGCGCGGATTGGCCGAGGCCGGTCACAGCGTGGAT
GTCATCAGTCCATTCGAGGACAAGGACCCTCCAAACGGATACAAGGACCA
CCTGCTGCCGCCCTCCACCTTGACAGACACTATTAGCTTAGAGGACTTCG
AACGGCCCTACAGCTTCCTATTTCACTATGTAGAGTTCTTTATCCTGCAC
AAAATGGGAAGAGAGGACTGCAATACCACACTGCACAGCAGAGCCCTAAC
TGAGATCCTTAAGAATCCTCCTGGCTACTACGATGTAATTTTACTGGAGC
AATTCAATACTGACTGTGCGATGAGCGTGGCCCATGTTTTCCAAGCTCCG
GTCATTGGAATGAGCAGCTGTGCCCTGATGCCATGGCATTATGAACGATT
TGGAGCCCCTCTGATCCCATCGTATATATCAGCATTGTTCCAGGGACAAT
CCCAGGAGATGTCCTTTGCGGGACGATTGGGCAACTGGATTACTGTGCAC
TCCCTCAACTTGCTGTATAAAATGTTTACAGTTCCCGCCGGAAACGCCTT
GATTCGCCAAAGATTCGGTCCTGGACTGCCCGTCCACGGAGGACTTGGTG
GAGGGAATACTTCTCTAATGCTGGTCAACCAGCACTTTTCGCTCAGTGGG
CCAAAGCCCTTTGCCCCCAAACGTCATCGAAGTGGGGTGGTGTACATATA
AGTCCACCCGAAACCGCTGCCCTCGGATCTTCAGAAAATACTGGAATACG
CACCCAAAGGAGTCATCCCTAATTAGCTGGGGCTCTCACTGAAAGCGTGT
CTCTTTCCGCTGCTCGGAAAAGATGGAATCGTTAAGCGATTGGAGAATGG
GAGCAGGAGGCCATCTTGAAGTATGAAATGACACCGCTGCCATTAGCCAC
CAAATCTGCACATCAGGAGTGCCTGGCTCAGCGAGACTTCCCTCGTCTAT
CAATCTTAAGGATTATTTTCCAGGGTGCCTATGGGACCCAGGAGGCCGGC
TCCAAGCTGTGCCATGGGTGGTTCCATTAACGGCACATTCGTCATATTGC
CGCAATTGTGGGTGGCACCGGGCCGGCA
FMO03261.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17322-RB | 1903 | CG17322-RB | 155..1208 | 36..1091 | 4745 | 97.4 | Plus |
| CG17322-RA | 1807 | CG17322-RA | 59..1112 | 36..1091 | 4745 | 97.4 | Plus |
| CG17322-RD | 1900 | CG17322-RD | 152..1205 | 36..1091 | 4745 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18827508..18827886 | 292..670 | 1895 | 100 | Plus |
| 2L | 23513712 | 2L | 18827002..18827260 | 36..294 | 1295 | 100 | Plus |
| 2L | 23513712 | 2L | 18827946..18828364 | 671..1091 | 1220 | 92.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:00:38 has no hits.
FMO03261.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:09 Download gff for
FMO03261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17322-RA | 51..1119 | 30..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:37 Download gff for
FMO03261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17322-RD | 139..1214 | 23..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:04 Download gff for
FMO03261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17322-RD | 139..1214 | 23..1101 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:04 Download gff for
FMO03261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18826989..18827259 | 23..293 | 98 | -> | Plus |
| 2L | 18827510..18827886 | 294..670 | 100 | -> | Plus |
| 2L | 18827946..18828373 | 671..1101 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:37 Download gff for
FMO03261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18826989..18827259 | 23..293 | 98 | -> | Plus |
| arm_2L | 18827946..18828373 | 671..1101 | 92 | | Plus |
| arm_2L | 18827510..18827886 | 294..670 | 100 | -> | Plus |
