FMO03262.5prime Sequence
1214 bp (914 high quality bases) assembled on 2008-07-09
> FMO03262.5prime
TTCGTATAGCATAATAAAAAAGAAGTTATCAGTCGACATGGCGCGAGTTC
AGGCCAGCGACTCGTTGATTCCCCGCCAGGTGTTCGAGGTTCCTCCGGCG
GAACCCAATAATTCCACGGCGGACAGCGGCAGTCAGGGTTCCGGGGTAAA
GCTAAAGAAGCAGATCGGCCTGCTCGATGGAGTGGCCATCATCGTTGGTG
TAATTGTCGGATCCGGCATCTTCGTGAGTCCCAAGGGAGTGCTCAAGTTC
TCCGGCTCCATAGGACAATCCCTCATCGTTTGGGTCCTCAGCGGAGTGCT
CAGCATGGTGGGCGCCCTATGCTACGCCGAATTGGGCACGATGATACCCA
AATCAGGCGGAGATTATGCCTATATAGGCACTGCATTTGGTCCTCTGCCT
GCGTTCCTTTATCTGTGGGTGGCCCTGCTGATCCTGGTGCCCACGGGCAA
TGCGATTACGGCTCTGACTTTTGCCATATATCTGCTGAAACCTTTTTGGC
CTTCCTGCGACGCGCCCATTGAAGCTGTTCAGCTGCTGGCGGCTGCCATG
ATATGTGTGCTGACGCTTATCAATTGCTATAATGTTAAGTGGGTTACGCG
TGTGACGGACATCTTTACGGGCACCAAGGTGGTTGCCCTCCTGGTGATCG
TTGGCGCCGGAGTCTGGTGGTTGTTCGATGGAAACACAGAGCACTGGGAT
AATCCCTTCTCGGGAGGCCTTCAAGATCCTGGATATATAGCCCTGGCCTT
CTATAGCGGCCTCTTCTCGTACTCCGGCTGGAACTATTTGAACTTTGTAA
CAGAGGAGCTCAAGGATCCGTACCGAAACCTTGCCCAAGGCCATTTGCAT
CTCAATGCCGGTGGTCACGGTCATCTATATGATCACGAATAATGCATACT
TTTCGTTCTCTCGCCAGACGAGATCCTTTCGGCAAATGCAGATGCCAGTC
AGTTTGGCAACAGATGCTGGGGAATATGTCCTGAAATATGCCCTTCCTGG
TGCCTGATCCACTTTTGGTTCCGCTGAATGGAACGATCTTCCCCATCCTC
CGACTTTTCTTCGTCGGTGCAAGGAATGGCCACTGCCAGGCCGCCATTAC
CTGAATTACGATAATTGCCCTGACACCTTGGTGCCCTCCTTGAAATCCTG
GGCGTGCCAACCATTCGTGCTGTGTGGTTTTAACGGGGACACCTTACTCA
TCAATATTTCATTT
FMO03262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mnd-RD | 2046 | CG3297-RD | 96..1215 | 38..1157 | 4920 | 96.6 | Plus |
| mnd-RA | 2491 | CG3297-RA | 541..1660 | 38..1157 | 4920 | 96.6 | Plus |
| mnd-RC | 2376 | CG3297-RC | 426..1545 | 38..1157 | 4920 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14990146..14990690 | 555..1098 | 2030 | 94.3 | Plus |
| 3L | 28110227 | 3L | 14987952..14988250 | 38..336 | 1495 | 100 | Plus |
| 3L | 28110227 | 3L | 14989848..14990069 | 335..556 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:16 has no hits.
FMO03262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:17 Download gff for
FMO03262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RC | 411..1544 | 38..1172 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:54 Download gff for
FMO03262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RC | 426..1559 | 38..1172 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:46 Download gff for
FMO03262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mnd-RC | 426..1559 | 38..1172 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:46 Download gff for
FMO03262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14987946..14988249 | 34..335 | 98 | -> | Plus |
| 3L | 14989849..14990067 | 336..554 | 100 | -> | Plus |
| 3L | 14990146..14990722 | 555..1133 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:54 Download gff for
FMO03262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14981046..14981349 | 34..335 | 98 | -> | Plus |
| arm_3L | 14982949..14983167 | 336..554 | 100 | -> | Plus |
| arm_3L | 14983246..14983822 | 555..1133 | 94 | -> | Plus |
