FMO03263.5prime Sequence
1257 bp (978 high quality bases) assembled on 2008-07-09
> FMO03263.5prime
CGTATAGCATAATTAAAAAGAAGTTATCAGTCGACATGTCTGGCTTAGAG
TACGGGTTGCATAGATACGATGATCTGCCGCTGGAGATTGTTTTGAAGAT
TTTCAGCTATCTCGGCTACTCGGACTTACAAGCGGCAGGATCCACCTGCC
AGCGATGGCATGCGGCGCTGGATCAGGCGGAATTTAACCAGCGCACGCGA
GTCTGCTTCTCCAAGGTGGTGCTATCGGATCAATTGAGTCCTGGAGTGGA
TCTGATGCGCTGCGAGCGGCGTTTCCAGCACTTCCTGTTCGAGGACGTGA
CACTGGGACAAGTAAAGGAATTGATGCGCTTCATGGGCAGGACCGCTCAG
TCCCTGGCTCTGGACAATGTGGATTTGAATGACAAACAGTTCTACGGCAT
GCTGGGCGTGCTGCCCCATCTCCACTCGCTGTCGCTGAAGCGCTGTCTGC
CGCTGTTCATGTCCGGCTCTTTCCTGGACTCTTACAACAACTCCTGTCCT
GACCTAAACGACCTGGCAAGCAATCTGGCCGGCATCAAGGAGCTGACGCT
GTGCGAGAACCAATACCTCACGGATGCCATTCTTATGCGTCTCACATCGT
TCATGCCCAGTCTGGAAGCGATTAACATGTCCGGCTGTCACATAGCCTTT
CACAATGCTATTCATCGCAGATTTTACCCTGCCACCAGCTCCTCGGATCA
CGTTTTGCCCAGCGAGTCTGTGCTCACGTTCAAGTTCATCCTCACCATTC
TGAACCTGCAGCGACGTACGTTGCGCGTGTTGAACTTTAGCCACACCCTA
ATTGGCCAGGCTTTGTTGGCCCTTTGCGACCTCAATCTCCAACTGCAGCG
CCTCTATTTGGCCGGATGCAGACAGCTTAACTGCACCACAATCCTGAACT
TTCTAGCCACCACAGCCCCAGTTGTGTGCCCTCGATTTGTCGGCCACAAT
GTGTGTTAACGATGAAAATCTTGGCCGCCTTGTTAAAACTAATCCGCAGC
TGGAGCACCTTGAAGGTGAACGGCTGCTGACCATTACAAATGCTGGTGCC
ATCAACTTGGACAAGCTAAAGTGTCTCAAAGTTCTGGACCATCTTCAACT
GGCGATACTTGACAGGCAGCGAATACTATAGAAAGCCATCGCATAGCGAG
GAGAAATCCGGTTATACGAGACCTGAACGGTTCCATACCTTCAGATCTCG
GCGAGAAGTCACTCAGGACATTGGCCCCAGATTACATACGCAGTGTCTCG
TGCGTAA
FMO03263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8272-RB | 2804 | CG8272-RB | 102..1257 | 36..1198 | 5220 | 97.3 | Plus |
| CG8272-RA | 2804 | CG8272-RA | 102..1257 | 36..1198 | 5220 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8890117..8891120 | 1089..85 | 4695 | 98.9 | Minus |
| 2R | 25286936 | 2R | 8891250..8891300 | 86..36 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:52:15 has no hits.
FMO03263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:01 Download gff for
FMO03263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 93..1143 | 25..1080 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:17 Download gff for
FMO03263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 95..1145 | 25..1080 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:37 Download gff for
FMO03263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8272-RA | 95..1145 | 25..1080 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:37 Download gff for
FMO03263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8890126..8891118 | 87..1080 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:17 Download gff for
FMO03263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4777631..4778623 | 87..1080 | 99 | <- | Minus |
