FMO03264.5prime Sequence
1280 bp (490 high quality bases) assembled on 2008-07-09
> FMO03264.5prime
ATAGCATAATAAAAAAAAAGTTATCAATCGACATGGAGCTGAACAATGTT
CCCTTCGAGGACGCCACAAATGCTTCCAAGTCCTACTCTCAAGCAGCTAA
CACGCCTCCAAGTAATGAGAAACCCAAGCCGCAACTGCTCTACGCCATCA
ACGATAATCCCCCATGGTACTTGAGCATCTTCCTCGCATTCCAGCACTAC
CTGACCATGATTGGAGCCATTGTTTCCATACCTTTCATCCTGACGCCGGC
GTTGTGCATGTCCGATGAGGACGCCAACCGGGGCATCATCATCTCTACGA
TGATCTTCGTCACGGGCATCGTTACCTACTTCCAGGCCTCGTGGGGCGTC
CGTTTGCCCATTGTTCAGGGCGGAACTATATCGTTCTTGGTGCCCACCCT
TGCCATCTTGGCCCTGCCGCAATGGAAGTGCCCGGAGCAGGCCGTAATGA
ATGCCATGGACCAGGCTGACCGGGAGGAACTATGGCAAGTGCGTATGCGG
GAGCTATCCGGCGCTATTGCCGTGTCCGCCATGGTGCAAGTTATCCTGGG
CTACACTGGTCTGGTGGGAAAAATCCTTAAGTACGTAACTCCATTGACCA
TTGTACCCACTGTGTCCCTGGTGGGTCTTACCCTATTCGAGCACGCAGCT
GAAACAGCATACAAGCATTGGGGCATTGCTGTGGGAACCACTGGAATGCT
GACACTCTTTTCGCAAATAATGTCGAATGTTCCCGTGCCTATCTTGGCCT
ACCGCAAGGTCACGGCTTGGAAATTCTCCAGTTCCCATTGTCCGCCTCTT
TCCCGTCCTGCTGACCATCATGATAATGTGGGGACTGAGCGGAATTCTGA
CTGCTACGGATGTCTTTCCTCCGTCACTCCCTTCTCGCACCCATGTTCGC
CTTGAATGTGCTGACCCGTGCAAAGCGGGTCCTATGTCCCGTATCAGGAA
CATTTTGACTGGCCCTCCCATGACCCAGACCGAGCGTGCTTGCATGTTTG
ACCGAAGAACTCGCTGAGGGTGAAACACCTACTACAATCAACGGTGTTCA
TAAGTCCGGACGCCACTTCACTACGCTTCATAGAATAATAAAAGGATAGG
GAAACGAAGGCTTTGGTACTGTTCTCCCCCGCGTCCTTGGGGGGAAGCGG
GGAAATAGGGACACATTCCTCTGTGAAAGAAATGTTGGGGGCACATCTGG
GCACACCATAAATTGGACTCCGCGAATGGTTAAATACGAGGGCCGTCCGC
TGTTGGAAAATGACGGGCGCTTCCTCACAG
FMO03264.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6293-RB | 2601 | CG6293-RB | 119..1084 | 32..998 | 4195 | 96 | Plus |
| CG6293-RA | 2144 | CG6293-RA | 119..1084 | 32..998 | 4195 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10309899..10310518 | 685..66 | 2965 | 98.5 | Minus |
| 3R | 32079331 | 3R | 10309420..10309699 | 964..685 | 985 | 93.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:41 has no hits.
FMO03264.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:29 Download gff for
FMO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 101..1033 | 32..964 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:17 Download gff for
FMO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 119..1051 | 32..964 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:08 Download gff for
FMO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6293-RA | 119..1051 | 32..964 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:08 Download gff for
FMO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10309420..10309698 | 686..964 | 93 | <- | Minus |
| 3R | 10309899..10310518 | 66..685 | 98 | <- | Minus |
| 3R | 10311462..10311495 | 32..65 | 94 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:17 Download gff for
FMO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6135142..6135420 | 686..964 | 93 | <- | Minus |
| arm_3R | 6135621..6136240 | 66..685 | 98 | <- | Minus |
| arm_3R | 6137184..6137217 | 32..65 | 94 | -> | Minus |
