FMO03268.5prime Sequence
1200 bp (904 high quality bases) assembled on 2008-07-09
> FMO03268.5prime
CGTATAGCATAAAAAACAAAGTTATCAGTCGACATGGCCAGTCCAGCAGC
AGGACCCTCCAAGCAGGAGATCGAGTCGGTCTTCAGTCGCCTGCGCGCCC
AGCCAGCTAACAAATCCTGCTTCGACTGCGCTGCCAAGGCTCCCACCTGG
TCCTCCGTTACCTATGGCATCTTCATTTGCATCGACTGTTCTGCCGTGCA
CCGCAACTTGGGCGTGCATCTGACCTTCGTGCGCAGCACCAACCTGGACA
CCAACTGGACCTGGCTCCAGCTCCGCCAGATGCAACTGGGCGGCAACGCG
AACGCCGCGCAATTCTTCCGCGCCCACAACTGCAGCACCACCGACGCCCA
GGTCAAGTACAACTCGCGGGCGGCCCAGCTTTATAGGGACAAGCTGTGTG
CCCAGGCCCAGCAGGCCATGAAGACGCACGGCACAAAGCTGCATTTGGAA
CAGACGGACAAGAGCGAGGGCAACGAAGCCGCTAGGGAGGAGGACTTCTT
TGCCCAGTGTGACAATGAGGTGGACTTCAATGTCCAGAACAACAATGTCA
GTAAGGATCCAAACCCACCCACCGTTGCTCCGGTCATCAGCGTTGAAACG
CAACAAGGTGGCGCCCCCAGCGTGAATCTGCTTAATTCCGTGGTGCCGGC
AGCAGTGCCGTCGTCCATAGGCGCGCGAAAGGTGCAGCCGAAGAAGGGTG
GACTGGGTGCTCGCAAAGTGGGCGGTCTTGGAGCCACGAAAGTTAAGACT
AACTTCGCAGACATCGAGGCCCGTGCCAACGCGGCTAACGAGATGAAGAC
ATCAGCTGCAGCAGCACCTGTGGTCAAGCCACAGACGGCCGAGGACGAAC
TGAGACGTGGCCAGCATGCGATTGGCATACCAAGAACTCTCCATGCAGAG
ACCGCGAGGAGGCCAAGCTTAAGACCATGGACCCTGCTAGCTAAACAGAA
TGGAGCGCTGGGCATGGGCTTCAACCTGCGAGGCTCCGGACTGGCCCACC
TCCGGCTTCTTCGGCGATATTGAGACTTATTCAGCAGTCGGCCGCCCCTT
AAGCAAACTCTCCTATTGAAAGGCGAGAATTTTTTCACTGACCTTTCCAT
ATCGAAATGAACCACGCTTGAGAAGAGAAGATCTTAGCGAAGCCGGGAAG
CTCATGCGAACCGTAGCTGCTATTGACCGTGAGCGCTTGGCCTACCGGAC
FMO03268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ArfGAP3-RC | 2580 | CG6838-RC | 382..1457 | 30..1102 | 4910 | 97.9 | Plus |
| ArfGAP3-RB | 2307 | CG6838-RB | 109..1184 | 30..1102 | 4910 | 97.9 | Plus |
| ArfGAP3-RA | 2689 | CG6838-RA | 396..1471 | 30..1102 | 4910 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22716569..22716892 | 438..115 | 1620 | 100 | Minus |
| 3L | 28110227 | 3L | 22715596..22715998 | 1102..703 | 1235 | 91.4 | Minus |
| 3L | 28110227 | 3L | 22716049..22716204 | 709..554 | 750 | 98.7 | Minus |
| 3L | 28110227 | 3L | 22716297..22716416 | 556..437 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 22716971..22717055 | 114..30 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:40:06 has no hits.
FMO03268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:33 Download gff for
FMO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6838-RC | 378..1465 | 26..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:00 Download gff for
FMO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArfGAP3-RA | 392..1479 | 26..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:50 Download gff for
FMO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArfGAP3-RA | 392..1479 | 26..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:50 Download gff for
FMO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22716971..22717059 | 26..114 | 97 | | Minus |
| 3L | 22715606..22715998 | 703..1092 | 94 | <- | Minus |
| 3L | 22716056..22716202 | 556..702 | 100 | <- | Minus |
| 3L | 22716298..22716414 | 439..555 | 100 | <- | Minus |
| 3L | 22716569..22716892 | 115..438 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:00 Download gff for
FMO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22710071..22710159 | 26..114 | 97 | | Minus |
| arm_3L | 22708706..22709098 | 703..1092 | 94 | <- | Minus |
| arm_3L | 22709156..22709302 | 556..702 | 100 | <- | Minus |
| arm_3L | 22709398..22709514 | 439..555 | 100 | <- | Minus |
| arm_3L | 22709669..22709992 | 115..438 | 100 | <- | Minus |
