FMO03273.5prime Sequence
1256 bp (1059 high quality bases) assembled on 2008-07-09
> FMO03273.5prime
CTTCGTATAGCATAAAAAAACGAAGTTATCAGTCGACATGTCTGGAAATC
CTTTCGACAGCGACGAAGATCAAAGCTCGGCCAGTGGAGAGATACTAGAG
GGCTTCCTATGTCCCATTTGCCGTGCGGATCTCAAGTCCATCGATGTGCT
CACGGATCATTTTGCCCGCCAGCATGCGGAAGAGGAGGATGCCCTAAAAT
CCTTTAAAGATATCTTTACCAAGGCGAAAAAGAAGATCCTAAACCCCTTT
GAGGATGAAAAAGGTGCATCTGTATCGTCGCCCGCAGGTTCCTCCTCTTC
AGCGGCTGGCAAGAATCCCAATGGCAACGGAGATCGCAATGGACCCAGTA
ATGCCCGCTCCCGTCTAAATGTATTTAACTATATGGCCAGGCAGCAGCCT
GGTGCTGAGTGCTCCCACTTCGAGTACTTTCAGTCCATTCGCAATCCTCG
CCTGGAGCGATATGCCAGCGAAACAAACAAACTAATCATTCGTTTGCACC
GCCTGCTTAAGGATCTGCCAGCGGATTCAGTGCAGCGGCGTCAGCATGAA
CAGCAAACAGTTGCCTGGCTGGATGGTAGTTCCGTCAAGTTGTGTCCCAG
TTGTGCCAAGAGTTTCCACATCGCCCGAAGACAACACCACTGCCGTTTGT
GCGGAGGCATAATGTGCAATGATTGCTCCAAGTTCCTGCCCCTGGAAGAT
GCCATGCAACTAGCCAGTCTTTCCACCACAAGAAGCGAGCCCCTTCAGCA
GCTGCATCAGCATGAGAACGCCATCCGGCTGTGCGAACACTGCCTTTGGC
TGCTGGACACCCGAAAGGATATGCACGAAGTCGCACTTGTCGCCCACTCC
TCGTCCAGGTCTACGAACAAATTCGTCAACTACAAAAAGAAGTTACCCCG
GGATCTGGACATGTATCTAAGATCATCAATAGCTTGAACGAAGGGGACAC
AATCTTCACGTTGGCGGATGCAAGTGCTTTGCCGCGGCAAGAATGGACAA
GTGGCAAAAGGCCATTGGACATGAAGGAGCCAAGCGCATTTCTAAGCATA
TTTTTGTGAACCAGGCGGCCGGGGAAGAAGCAATTAAAGAAAGGCCATTT
CGGTTGGCTGCATCCAAGCCATCAAGGGAATCTAATGTTTATCCCTGCCC
CCCTGGCCGAAGAAATCGCCAATATGCCCAATGCCGGACGTAAGCCAGAA
AACGGAACACGATATCTCTCCCGGACACAGCGCCTGGTGCCCACTGGAAA
AGCATC
FMO03273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbsn-5-RA | 1846 | CG8506-RA | 261..1363 | 38..1152 | 4985 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8160092..8160758 | 38..704 | 3335 | 100 | Plus |
| 2L | 23513712 | 2L | 8160817..8161230 | 705..1127 | 1315 | 93.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:16 has no hits.
FMO03273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:36 Download gff for
FMO03273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-RA | 245..1344 | 28..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:56 Download gff for
FMO03273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 252..1351 | 28..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:49 Download gff for
FMO03273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbsn-5-RA | 252..1351 | 28..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:49 Download gff for
FMO03273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8160081..8160756 | 29..702 | 99 | <- | Plus |
| 2L | 8160815..8161253 | 703..1153 | 92 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:56 Download gff for
FMO03273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8160081..8160756 | 29..702 | 99 | <- | Plus |
| arm_2L | 8160815..8161253 | 703..1153 | 92 | <- | Plus |
