Clone FMO03277 Report

Search the DGRC for FMO03277

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:32
Well:77
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11107-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03277.5prime Sequence

377 bp (195 high quality bases) assembled on 2008-07-09

> FMO03277.5prime
TAGCATACCTCAAACGAAGTTATCAGTCGACATGTCCAAGCGTCGAATCG
CATTGGGGGAGACCTACGGCAGCAAGGCGAAGAAGGACCCGGAGGCGTCC
TCCTCGTCGGCGGCAGCCGCTGCCGGCACAGTGGCTCAAATCCTGGGCGG
ATTCGTGCCCAACAAGCAACCGCCCACGATGAACCCGCTGACCAACACGC
CGTACTCACAACGGTACCAGAATCTCTACAAGAAGCGCATTGCGCTGCCC
GTGTTCGAGTACCAGGCGGACTTTATGCGGCTGCTCAGCCTGCACCAGTG
TATTGTGCTGGTGGGCGAGACAGGCTCCGGCAAGACGACCCAGATCCCGC
ATTGGTGCTTGGACTTCGCAGTATCCA

FMO03277.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11107-RB 2610 CG11107-RB 204..550 31..377 1660 98.6 Plus
CG11107-RA 2747 CG11107-RA 341..687 31..377 1660 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7387635..7387927 85..377 1420 99 Plus
2R 25286936 2R 7387527..7387581 31..85 245 96.4 Plus
Blast to na_te.dros performed on 2014-11-28 19:38:14 has no hits.

FMO03277.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:41 Download gff for FMO03277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11107-RA 314..659 31..376 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:44 Download gff for FMO03277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11107-RA 341..686 31..376 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:55 Download gff for FMO03277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11107-RA 341..686 31..376 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:55 Download gff for FMO03277.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7387527..7387580 31..84 96 -> Plus
2R 7387635..7387926 85..376 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:44 Download gff for FMO03277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3275032..3275085 31..84 96 -> Plus
arm_2R 3275140..3275431 85..376 98   Plus