FMO03278.5prime Sequence
1270 bp (968 high quality bases) assembled on 2008-07-09
> FMO03278.5prime
ACTTCGTATAGCATAATAAAACGAAGTTATCAGTCGACATGTTAAAAGGT
GGAATGTTATCGCGGTGGAAGATGTGGTCTCCACAATACAAAATCTTGAG
AAATCACCTTATAAATTTCAAGTCGGTGTCCACATATAAGAACATTTCTG
GCGTCAATACCAAGCAGCCCAAATCTCCACGACAATTTGGTTGCATGCCA
CATGTAACTAAGAAAAGAAAATACAAGTATGAAGAGGGAAAGACATACCA
TGGCTTCCAATGCGAACGTGTGGAACACATTTCTGAATTTGAACTTACGT
CCTATACTTTTCGATATGAGCGCACGGGTACAGAATTATGGCATATCGAC
CGAAATGATTCAAACAACGTATTTTCCATTAATTTTCGAACCACGCCCTT
TGATTCTACTGGTCTACCTCATATTTTAGAGCATTTATCGTTGTGCGGTT
CACAAAAATATCCTGTCAGGGACCCTTTCTTCAAAATGCTTAACCGCTCG
GTAGCGACATTTATGAATGCAATGACTGGTCCAGATTATACTATTTATCC
TTTTTCGACGATGAATGAGATAGATTTTAGGAATTTGCAACATATTTATT
TAGATGCCGTATTCAGACCAAACCTGGCGTATTTCGATTTTCTTCAAGAG
GGCTGGAGGCTAGAAAACAAAGATATATTCGATAAACAATCGAAGCTTGT
AATCAAAGGAGTTGTTTATAACGAAATGAAAGGTGCGTTTTCTGAAAAAC
GCGCAGGTATTTAGTCAGAATTTACTCAATAATATTTTTCCTGATCACAC
ATATCGACATGTGTCTGGCGGAAATCCATTGGAAATACCCAAGTTAGCAT
ACAACGATTTAGTTGAATTCCACAAAAAATACTATCATCCAAGTAATGCT
CGCATATATTCCTACGGATTATTTGATGCAAGTAAAACCCTCGCACTTCT
TGGACGAGGGAGTATTTATCAGATCAAAGCTGGGTTTGACAACCTCCTTA
CAGTTTAATACGTCAGGCAGGAGCGGTTGGACTCAGCCTCGTCTTGTACA
TATATCCCGGTAGACTAGAATAACATGGGTAACATCAATGGATCGACCGA
CCCAATTGCCTATTGCACCTGCTGATGTGGTGATGCACCAATTACCAGAA
GGTTGGAATACACGGGGCATACTGAGAGACTTATTCCTGGGGCTACTCCT
TTCCAAACCCTAAGAACTAGTGTTCCGGGGGATTAACTACACACCACGTG
GAGTATTATCCTGGGTGGGA
FMO03278.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3107-RD | 3966 | CG3107-RD | 824..1971 | 38..1195 | 5060 | 96.8 | Plus |
| CG3107-RC | 3156 | CG3107-RC | 14..1161 | 38..1195 | 5060 | 96.8 | Plus |
| CG3107-RA | 3230 | CG3107-RA | 88..1235 | 38..1195 | 5060 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5091898..5092476 | 38..616 | 2895 | 100 | Plus |
| 2R | 25286936 | 2R | 5092525..5093027 | 615..1129 | 1845 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:39 has no hits.
FMO03278.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:14 Download gff for
FMO03278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3107-RC | 25..1085 | 32..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:13 Download gff for
FMO03278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3107-RB | 185..1245 | 32..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:10 Download gff for
FMO03278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3107-RA | 84..1144 | 32..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:10 Download gff for
FMO03278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5091894..5092476 | 32..616 | 99 | -> | Plus |
| 2R | 5092527..5092978 | 617..1078 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:13 Download gff for
FMO03278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 979399..979981 | 32..616 | 99 | -> | Plus |
| arm_2R | 980032..980483 | 617..1078 | 97 | -> | Plus |
