FMO03279.5prime Sequence
703 bp (703 high quality bases) assembled on 2008-07-09
> FMO03279.5prime
TAGCATACATAAAAAGAACTTATCAGTCGACATGGAAATTGAAATTGGCG
ATCAACCCCAGCCTCCGGTGAAGTGCTCCAACTTCTTCGCTAACCACTGG
AAGGGATTGGTTGTGTTCCTGGTGCCGCTGCTATGTCTGCCTGTTATGCT
GCTAAACGAAGGCGCCGAATTTCGGTGCATGTACCTCCTTTTGGTAATGG
CCATATTTTGGGTTACGGAAGCCTTGCCTCTCTATGTGACGTCCATGATA
CCGATTGTGGCCTTCCCAATAATGGGTATAATGAGCTCGGATCAGACTTG
CCGCTTGTACTTCAAGGATACGCTGGTGATGTTCATGGGCGGCATTATGG
TCGCCCTGGCTGTGGAGTACTGTAATCTACACAAACGTCTTGCCTTGAGG
GTAATCCAGATCGTGGGCTGCAGTCCCCGCATATTACACTTTGGCCTCAT
CATGGTTACAATGTTTTTGAGCATGTGGATTTCGAACGCCGCCTGTACTG
CCATGATGTGTCCGATTATCCAAGCCGTGCTGGAGGAGCTGCAGGCTCAG
GGTGTCTGCAAAATCAACCATGAGCCTCAATACCAAATCGTTGGGAGGCA
ACAAGAAAAAACAACGAGGGATGAGCCACCATACCCCACCAAGATCACTC
TGTGCTACTATCTGGGCTTTGCCTACGCCTCCTTCGCTGGGGGGGCTGTG
GAA
FMO03279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Indy-RD | 2581 | CG3979-RD | 272..938 | 32..703 | 3175 | 98.7 | Plus |
| Indy-RA | 2484 | CG3979-RA | 175..841 | 32..703 | 3175 | 98.7 | Plus |
| Indy-RC | 2600 | CG3979-RC | 291..957 | 32..703 | 3175 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18830852..18831035 | 610..426 | 845 | 98.4 | Minus |
| 3L | 28110227 | 3L | 18831094..18831242 | 431..283 | 745 | 100 | Minus |
| 3L | 28110227 | 3L | 18831494..18831621 | 167..40 | 625 | 99.2 | Minus |
| 3L | 28110227 | 3L | 18831311..18831427 | 283..167 | 585 | 100 | Minus |
| 3L | 28110227 | 3L | 18830676..18830734 | 683..625 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:53 has no hits.
FMO03279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:42 Download gff for
FMO03279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RA | 147..818 | 24..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:08 Download gff for
FMO03279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RC | 284..957 | 24..703 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:41 Download gff for
FMO03279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Indy-RC | 284..957 | 24..703 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:41 Download gff for
FMO03279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18830658..18830734 | 625..703 | 94 | <- | Minus |
| 3L | 18830840..18831028 | 433..624 | 98 | <- | Minus |
| 3L | 18831093..18831241 | 284..432 | 99 | <- | Minus |
| 3L | 18831311..18831427 | 167..283 | 100 | <- | Minus |
| 3L | 18831495..18831621 | 40..166 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:08 Download gff for
FMO03279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18824411..18824527 | 167..283 | 100 | <- | Minus |
| arm_3L | 18824595..18824721 | 40..166 | 99 | <- | Minus |
| arm_3L | 18823940..18824128 | 433..624 | 98 | <- | Minus |
| arm_3L | 18823758..18823834 | 625..703 | 94 | <- | Minus |
| arm_3L | 18824193..18824341 | 284..432 | 99 | <- | Minus |
