FMO03280.5prime Sequence
1049 bp (915 high quality bases) assembled on 2008-07-09
> FMO03280.5prime
ATAGCATACATAAAACGAAGTTATCAGTCGACATGGCTGCGAGATTGATG
AACGCCCAGGCACAGGTGTGTCGACTGGGCAAGCATGTTGCGTCCGAAGC
CACAGTGGTGCGTCAGTTCCACGCCTCCTGCTACACCGCCTCCAAAGTGG
CTCTGTCCAAGTTCGACTCGGACGTCTACCTGCCGTACGAGAAGCTGAAC
AAGCGCCTGGAAGTGGTGCGCGGTCGCTTGAACCGCCCACTGACTCTCTC
CGAGAAGGTGCTGTACTCGCATCTGGACGATCCCGCAAACCAGGACATCG
TGCGCGGTACTTCGTACCTGCGTCTTCGCCCCGATCGTGTGGCTATGCAG
GATGCCATTGCACAGATGGCTCTGCTTCAGTTTATCTCCTCCGGACTGAA
AAAGGTGGCTGTGCCCTCCACTGTTCACTGTGATCATTTAATCGAGGCCC
AGATTGGTGGACCCAAGGATTTAGCCCGTGCCAAGGACCTGAACAAGGAA
GTGTACGATTTCTTGGCCAGCACCTGTGCAAAGTACGGATTGGGCTTCTG
GAAGCCAGGCAGCGGAATCATCCATCAGATCATTCTGGAGAACTACGCTT
TCCCCGGCCTGCTGATGATTGGTACTGACTCACACACCCCCAACGGTGGT
GGCTTGGGTGGCCTGTGCATTGGCGTTGGTGGTGCTGATGCCGTCGATGT
GATGGCCGACATCCCCTGGGAGCTGAAGTGCCCCAAGGTGATTGGTGTCA
ATTTGACTGGCAAGATCAGCGGCTGGACCTCGCCCAAGGATGTTATCCTG
AAGTTGCCGATATCCTGACCGTCAGGGAGGCACCGGTGCCATCATTGAAT
ATCACGGCAAGGGTGTTGACTCTATCTCTTGTACAGGCATGGCACCATCT
GCAACATGGGTGCTGAGATCGGAGCTACCACCTCTCCTGTCCCCTTCAAC
CAGCGCATGGCTGATTACCTGAAATCGACACGCCCTGCTGGCATGCCTCG
AAGCCCAGAGTACAGGCCAAGATTCTGGTCGCTGACAAGAACTGCAAGT
FMO03280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acon-RF | 3102 | CG9244-RF | 202..1226 | 32..1049 | 4800 | 98.4 | Plus |
| Acon-RE | 3022 | CG9244-RE | 121..1145 | 32..1049 | 4800 | 98.4 | Plus |
| Acon-RD | 2854 | CG9244-RD | 121..1145 | 32..1049 | 4800 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21170188..21171181 | 63..1049 | 4470 | 98.3 | Plus |
| 3R | 32079331 | 3R | 11137525..11138117 | 333..922 | 880 | 77.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5965..6050 | 142..57 | 114 | 62.1 | Minus |
FMO03280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:03 Download gff for
FMO03280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acon-RB | 412..1440 | 29..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:19 Download gff for
FMO03280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acon-RB | 117..1145 | 29..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:28 Download gff for
FMO03280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acon-RD | 117..1145 | 29..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:28 Download gff for
FMO03280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21168767..21168804 | 29..65 | 97 | -> | Plus |
| 2L | 21170191..21171181 | 66..1049 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:19 Download gff for
FMO03280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21168767..21168804 | 29..65 | 97 | -> | Plus |
| arm_2L | 21170191..21171181 | 66..1049 | 98 | | Plus |
