FMO03283.5prime Sequence
1245 bp (927 high quality bases) assembled on 2008-07-09
> FMO03283.5prime
TCGTATAGCATATTAAAACGAAGTTATCAGTCGACATGGCCACAAAACCG
GGAAAAGGTGACGGCAAGCAGGTGAAGGGAAAAAGGACCTCCAAGAACAA
GACAGATGGCCCCGGCGGTGGTGGCGGCGATGCCGATGACTTCGATGCCT
GGATGAAGTCGCGCCAGCTGCTCAAGCCCGATGACCAGCTCGATCTCACC
GAGGCGGAACTGGGCGAGGAGATCACCAAGGTGCTGACTCCCACCAACAC
GAACATCGTTCGCAATCTCGTGGTCTATAGCTTCAAGGAAGGCGAGTTTG
TTCCGGCTCCGTTGCCCGGCAATACGGTCACCCTAATCGCCTTTGCCGGC
AACTCACTTCACGTGGACTCCGATGAGGGTCGCCGTCAGATCGAGGAGTC
CGACGAGATTGGCTACCCACTGCCCATGCCCAACTACACTGTGGTGGAGC
AGCGCGAGACGGATAACGTCGACGGTGAGGAGGGAGAGGGCGAGGAGGAT
GATGATGGGGCCACCGCAAAGGACGCCGCCGTAGAAGACGAGGATGTCGA
GGAGGAGGACGACGAGGAGGCCAAGGGCACCGAAGGCGATGAGGGCGAGG
GCGAAGGCGAGGGAGAGGGTGCTGCTGCCCGCCAGGAGGACGATGAGCCC
GCCCACCAAGCGGCGGCCGTTTCATCCAAGAAACGCAAGCTAATCAACCA
GTTCAACTACTGCGAACGTGGTGCCCTCACCTACACAAATCCCAAAAGGA
ATGTAGACACCCAGACCATACCCCCACCCCGTTCCCAGTTTGGAGCCAAT
GTGCTGCAGTGGGTCATCTATGATTCCTATATGGAGAACTTTGCGGAGTC
CCAGAAGACGGCACCAAGAAGGAGGAGCGCAAGCGCGGCAAGAGGGAGAA
GAAGTTCCGGGATAAGTCGGGCATTGCCGACAGCTCAACAGAAGTATCTC
AATGCTGGCAGATCTCGAGCCGCTGATCAATCAGAATATCACGATGACTC
GCCCCCGACTATCGCTACTGGGGAGGATCGGTTAATGAGTTCGTGGAGGG
TGAGGGCACTGCTGCCACTCTGGAAGTTTCATTACGAACAGGACCAAAAG
AATGAACGTCCCGAATTCTGTCATTCGAGTCTCTATGGATTTCTACCGTC
GGTTCCGATCCCATGTATCTCGGAACAGAACAATAGAGGCTAACTGTGTT
CGTGTCCGGTTAGAAATCCTCAATTCCGGAACCTTATATTTTGAC
FMO03283.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9313-RC | 3069 | CG9313-RC | 606..1688 | 36..1110 | 4910 | 97.8 | Plus |
| CG9313-RA | 2649 | CG9313-RA | 186..1268 | 36..1110 | 4910 | 97.8 | Plus |
| CG9313-RB | 2652 | CG9313-RB | 186..1271 | 36..1110 | 4870 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20981311..20981741 | 84..514 | 2155 | 100 | Plus |
| 2R | 25286936 | 2R | 20981801..20982035 | 515..749 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 20982096..20982465 | 749..1110 | 1075 | 91.6 | Plus |
| 2R | 25286936 | 2R | 20979506..20979553 | 36..83 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:52:46 has no hits.
FMO03283.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:35 Download gff for
FMO03283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 156..1250 | 28..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:39 Download gff for
FMO03283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..1273 | 28..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:59 Download gff for
FMO03283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9313-RA | 179..1273 | 28..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:59 Download gff for
FMO03283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20981313..20981741 | 86..514 | 100 | -> | Plus |
| 2R | 20981801..20982035 | 515..749 | 100 | -> | Plus |
| 2R | 20982097..20982507 | 750..1148 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:39 Download gff for
FMO03283.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16868818..16869246 | 86..514 | 100 | -> | Plus |
| arm_2R | 16869306..16869540 | 515..749 | 100 | -> | Plus |
| arm_2R | 16869602..16870012 | 750..1148 | 91 | -> | Plus |
