FMO03284.5prime Sequence
1235 bp (935 high quality bases) assembled on 2008-07-09
> FMO03284.5prime
ATAGCATAAAAAAAACAAACTTATCAGTCGACATGCATTCGACCAAGATT
AAAGAGGGTGATGACAGAGAGGAGATGGAGCTAAATCAAATCTGGCGAGG
ATGTCGTAAAATCCAGGGCGCCATTTTTCGTTATAACTTTGACATCTGCG
CCGACTTAAAGCAGCATGATCCCTGTTGCAGTGGCTTCGTGTCCGAGCCC
ATTTTCACCGCCGTGCTGGGCAAGTATCGCAAGGTGGCCGGATTGTCCGA
GTCGGAACTCCGGGATGTCACTGACTATTTCCAAATTCGAGATGGACGCG
TAGCGTATCGTCAGTTCTGCAAGGTCGTCTGCAGCGAAACACTGCATAAG
ACCGCCAAAAGTGATCTAGCTACGGGACTGGAGTGGAACGATCCCTGGCA
TGTGAATGTTGTACCCCAGCCGGAGGATCGACGACGTCTCTGCCTGATCC
TGCTCAAGATTGCCCAACTATGCAATATTCCGCTCATGCCCTACTTTCAG
GACTACGAACTAATTGCACAAAATGTTTGGAGTTGTTACCGTTGCGCACT
TTTCTCGTGTGCTGCACTTTATGAAGATACCACTTTCGGAGTCCGATTTT
CTGCTCCTCCTCAGACGCTATATGAAGGATGGTTACCTGGTCAACTATTG
TGGCTTTCCTCAAGCACATCGATAATATTATAGCATACCTGGGCGAGCAT
CATCTGCTGGACAACTCACATGATATTATCAGGGACTTTCCGGGACGTTT
AGTGGACCTAGAACTTTCCCAACTGCCAGCTATTGAAGGGTTGCAAGGCA
GTGCATCCATCTTTTCCCGATGCCTGCAGTAACCCCAAAAAGAATCGAAA
TCAGTGCGACTTTCTGTCTGCATTCAGAACTACATCTACAAGACCTAAGT
GCCGCACCTCCGAGTTCTAGAGTGCTATGAACAGCCTAAACGTGGGGCAG
CCATCCCCAGAAATCAATTTGGACCGCGGTCTATCGGACATGGGGAGTGG
GGAAAATAATCTGACCCCAAAGGAAATGGTAATTCTGCTGGACGGCTACC
ATGATCCCGTGAAATCAATTCAGTGCGTTGGCCAATTTCCCTGATGAGAT
CTATATTATTTCACCATTATAAACCTGAGAAGAGGCCAGGGGGGACTGGA
TTCGCCCTTTCCTAATCCAGAATTGCCAAACCGGACGTGTCCTGTGGAAT
CCTGGGTGTCGGCTATATATGGTTCTCGTGATGCA
FMO03284.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10841-RA | 2406 | CG10841-RA | 121..1221 | 33..1138 | 4610 | 95.4 | Plus |
| CG10841-RB | 2403 | CG10841-RB | 121..1218 | 33..1138 | 4555 | 95.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13632811..13633018 | 513..722 | 950 | 99 | Plus |
| 3R | 32079331 | 3R | 13632578..13632750 | 340..512 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 13633079..13633457 | 722..1105 | 860 | 88.7 | Plus |
| 3R | 32079331 | 3R | 13632374..13632518 | 195..339 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 13632175..13632301 | 69..195 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 13632062..13632098 | 33..69 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:08 has no hits.
FMO03284.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:36 Download gff for
FMO03284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10841-RA | 121..1076 | 33..994 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:42 Download gff for
FMO03284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10841-RA | 121..1076 | 33..994 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:50 Download gff for
FMO03284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10841-RA | 121..1076 | 33..994 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:50 Download gff for
FMO03284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13632175..13632301 | 69..195 | 100 | -> | Plus |
| 3R | 13632375..13632518 | 196..339 | 100 | -> | Plus |
| 3R | 13632578..13632750 | 340..512 | 100 | -> | Plus |
| 3R | 13632811..13633017 | 513..721 | 99 | -> | Plus |
| 3R | 13633079..13633347 | 722..994 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:42 Download gff for
FMO03284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9458300..9458472 | 340..512 | 100 | -> | Plus |
| arm_3R | 9458533..9458739 | 513..721 | 99 | -> | Plus |
| arm_3R | 9458801..9459069 | 722..994 | 92 | == | Plus |
| arm_3R | 9457897..9458023 | 69..195 | 100 | -> | Plus |
| arm_3R | 9458097..9458240 | 196..339 | 100 | -> | Plus |
