Clone FMO03285 Report

Search the DGRC for FMO03285

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:32
Well:85
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9466-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03285.5prime Sequence

264 bp (222 high quality bases) assembled on 2008-07-09

> FMO03285.5prime
TTCGTATACCATAAAAAAAGAGGGGCCCTATCAGTCGACATGAAGTTCCT
GGGCATCGCCCTAATGCGTTGCCTTTTTGGCCCTTCAAGCTAAGTCAGCC
CAAGCTGTTTGTGGCTATGAGTCTTGCCATGAATCCCAAATCAAACATGA
TCAACATACACTTGGTGCCCCACTCCCACGACGATGTGGGCTGGCTGAAT
ACCGTTGATCAGTACTACTATGGCCACAAGAATAACATTCAGCACGCTGG
AGTGCATTAATTCA

FMO03285.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9466-RB 3074 CG9466-RB 68..282 40..256 945 96.3 Plus
CG9466-RA 3063 CG9466-RA 68..282 40..256 945 96.3 Plus
CG9468-RA 3160 CG9468-RA 172..278 144..250 355 88.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8775920..8776055 256..120 575 96.4 Minus
2L 23513712 2L 8780729..8780835 250..144 355 88.8 Minus
2L 23513712 2L 8776116..8776196 121..40 330 96.3 Minus
2L 23513712 2L 8768400..8768506 253..147 250 82.2 Minus
2L 23513712 2L 8772079..8772176 241..144 235 82.7 Minus
2L 23513712 2L 10458461..10458549 136..224 220 83.1 Plus
2L 23513712 2L 10455716..10455826 253..143 195 78.4 Minus
Blast to na_te.dros performed on 2014-11-28 22:49:58 has no hits.

FMO03285.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:37 Download gff for FMO03285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9466-RA 62..287 32..263 93   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:18 Download gff for FMO03285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9466-RA 64..289 32..263 93   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:19 Download gff for FMO03285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9466-RA 64..289 32..263 93   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:19 Download gff for FMO03285.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8775913..8776053 122..263 94 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:18 Download gff for FMO03285.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8775913..8776053 122..263 94 <- Minus