FMO03287.5prime Sequence
1263 bp (934 high quality bases) assembled on 2008-07-09
> FMO03287.5prime
CTTCGTATAGCATAAAAAAGCAAAGTTATCAGTCGACATGCAAAGTAACA
GTGCAAAAGATGATTCGGATGAAATGGAAATAATACCATCCGAACACAAT
GGTACAGTTCACGAAACCAAAAATGAAGACTCAGGTGATATCCACAGGGC
GGAGGAGAACCAGAAGTCCAGCATCGACCCAAATCTATATCTGTACGACG
ATGATTTGGAGACCAGGCCCCATATATCAACGTTCATTTCATCAATTGCC
AATTATGAGAACACGATACCAGCGGCCACCGATCCCGATGCAAAGCCGGC
AGCTCCATCGGCTCGAATGGGTACCCTAATTGGAGTGTTCTTGCCATGCA
TTCAAAACATCTTTGGTGTCATATTGTTCATTCGGTTAACATGGGTTGTT
GGAACGGCTGGCGCCGTGTGTGGATTCCTGATTGTTCTGACCTGCTGCTG
TGTGACCATGCTAACCGCGATCTCGATGTCGGCCATTGCAACGAACGGGG
TGGTTCCGGCGGGCGGGAGTTACTTCATGATATCACGATCCCTGGGCCCT
GAATTCGGCGGAGCGGTGGGAATGTTGTTCTATACGGGCACCACGCTAGC
AGCGGCGATGTACATCGTTGGTGCCGTGGAAATCGTATTGACATACATGG
CGCCGTGGGGCATCGATATTTGGGGACTTCACCAAGGACGCTGACGCGAT
GTACAACAATTTCAGGGTCTACGGCACTTTGCTGCTCATCTTTATGGGTC
TCATTGTGTTCCTGGGCGTGAAATTCGTCAATAAGTTCCGCGACGGTGGC
CCTGGCCTGCGTCATCCTTTGGATAATAGCGGTGTATGTGGGAATATTTG
ACAATATCCCATGGCACCGAAAAGCTATACATGTGTGTTCTGGGAAACGA
CTCTTGAAGGATATCCCGCTGGAGAATTGCACAAAGGAGACTCCTTCTTA
CGCGACTATACTGCCCGATGGTAATGCGAGGAATACTACCTGGGCAATAC
CGTGACCAAGTCAGGGCATCAAGGTTGCAGTGGGCGTGTCTACGACAAAT
CTTCCTTCGTTCTGGGAGGGCCAGTTCTATTCTACGGCAAAGATGCATTG
ACATGAAAACCTAGTGGAAGCCTACCAGCAGAATCTAGTCGAAATAACCC
CGCTCGCTCTCCCCTTCTATCGATCTCTTTCCAATCGGGTTCAAGGCATA
TGGTTGGAATCAGTCATATCGGCGCCACCTCGTTGTCTGTCTGACACAGC
GCCAGAGTAGGTA
FMO03287.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RC | 3544 | CG5594-RC | 206..1305 | 36..1118 | 4780 | 97 | Plus |
| kcc-RB | 3528 | CG5594-RB | 283..1382 | 36..1118 | 4780 | 97 | Plus |
| kcc-RG | 3675 | CG5594-RG | 283..1382 | 36..1118 | 4780 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23911675..23911871 | 127..323 | 985 | 100 | Plus |
| 2R | 25286936 | 2R | 23912187..23912321 | 320..454 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 23912896..23913026 | 747..879 | 535 | 97 | Plus |
| 2R | 25286936 | 2R | 23912531..23912634 | 537..640 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 23912728..23912836 | 640..749 | 500 | 99.1 | Plus |
| 2R | 25286936 | 2R | 23911459..23911551 | 36..128 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 23912383..23912466 | 454..537 | 420 | 100 | Plus |
| 2R | 25286936 | 2R | 23913086..23913205 | 880..994 | 350 | 95.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:53 has no hits.
FMO03287.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:04 Download gff for
FMO03287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5594-RC | 363..1359 | 32..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:33 Download gff for
FMO03287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RG | 279..1275 | 32..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:42 Download gff for
FMO03287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RG | 279..1275 | 32..1024 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:42 Download gff for
FMO03287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23911455..23911551 | 32..128 | 97 | -> | Plus |
| 2R | 23911677..23911868 | 129..320 | 100 | -> | Plus |
| 2R | 23912188..23912321 | 321..454 | 100 | -> | Plus |
| 2R | 23912384..23912466 | 455..537 | 100 | -> | Plus |
| 2R | 23912532..23912634 | 538..640 | 100 | -> | Plus |
| 2R | 23912729..23912834 | 641..747 | 99 | -> | Plus |
| 2R | 23912897..23913026 | 748..879 | 96 | -> | Plus |
| 2R | 23913086..23913204 | 880..993 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:33 Download gff for
FMO03287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19798978..19799074 | 32..128 | 97 | -> | Plus |
| arm_2R | 19799200..19799391 | 129..320 | 100 | -> | Plus |
| arm_2R | 19799711..19799844 | 321..454 | 100 | -> | Plus |
| arm_2R | 19799907..19799989 | 455..537 | 100 | -> | Plus |
| arm_2R | 19800055..19800157 | 538..640 | 100 | -> | Plus |
| arm_2R | 19800252..19800357 | 641..747 | 99 | -> | Plus |
| arm_2R | 19800420..19800549 | 748..879 | 96 | -> | Plus |
| arm_2R | 19800609..19800727 | 880..993 | 95 | -> | Plus |
