FMO03289.5prime Sequence
1209 bp (909 high quality bases) assembled on 2008-07-09
> FMO03289.5prime
ACTTCGTATAGCATACAAAAGACCAACTTATCAGTCGACATGAAACTCGT
GCTCCTTCTGAGCGCCCTGCTGGCGGGGATTGCCCTTTCCCAGGGAGCCG
CCGTGATGTCCGTGGATCTGGGCAGCGAGTGGATGAAAGTGGGCGTTGTG
TCGCCTGGAGTGCCTATGGAAATCGCCCTGAATCGCGAGTCCAAGCGCAA
GACGCCCGCGATCCTAGCCTTCCGCGATGGAACGCGAACCATTGGCGAGG
ATGCACAAACAATTGGTATCAAGGATCCCAACTCGGCCTATGGCTATCTT
CTGGATTTGCTGGGCAAGACCATCGATAATCCCATTGTGGATTTGTATAG
GAAACGCTTCCCATACTACAACATTGTGGGTGATCCGGAGCGCAACACCG
TGGTCTTCCGCAAAAGCGACACCGATGAATTCTCCGTGGAGGAACTGGTT
GCTCAATTGCTGGTCAAGGCCAAGCAGTTCGCCCAGGAATCCGTACAGCA
GCCAATAACCGAGTGCGTCCTAACCGTGCCCGGTTACTTTGGCCAAGCCG
AAAGGGAAGCTCTCTTGTCCGCCGCCCAGTTGGCCAATCTTAAGGTACTC
CAGCTAATCAACGACTATGCGGCGGTGGCTCTAAACTACGGCGTCTTCCA
TCGCGGCGAAATCAACGAAACGGCCCAGTATTTCCTCTTCTACGATATGG
GCGCCTACAAAACCTCAGCCGCTGTGGTAGCTATCAGTTGGTGAAGGATA
ACAAACCAGGGAGATCACCCGGTGGTGCAGTCCTTGGCGTTGGTTATGAT
CGCACTCTGGGAGGCCTGAAATTCAACTAAGATTGCGTGATATCTGGCGC
AGAGTTTAATGCCCTTAAAGAAGACTAAACCGATGTGACCACCAGTTCCC
CGAGCACTGGCCCAACTTTCAAGGAAGCAGGACGACTAAGATTGTCTGTT
CGCCAATACGGAGTTCTCCGCTCAATCGAAACCTGATAGAGACATTGACT
TTCTTGGCCGGTCCCTCGTGAGAGCTGGAGCTAATCTTGCAAGGATTCTT
GGCCAGGCCCAAAACCATTGGAAGAAGCCATTGCCTCTGTCCCACCCTCA
TCTGACTGTATCACCCAGGTGATTTTGTCTCGAGGCGAACCGAATCCAGT
GTGAGATCCTCAGCTGTCTTTAACCGGAACTGGTGTAAACTTCGCATGCT
CGAAGTAAA
FMO03289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2918-RB | 3387 | CG2918-RB | 132..1237 | 39..1128 | 4545 | 95.7 | Plus |
| CG2918-RA | 3175 | CG2918-RA | 197..1302 | 39..1128 | 4545 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2273318..2273954 | 975..348 | 2470 | 97.2 | Minus |
| X | 23542271 | X | 2274025..2274337 | 351..39 | 1550 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:43 has no hits.
FMO03289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:05 Download gff for
FMO03289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2918-RA | 202..1182 | 32..1002 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:33 Download gff for
FMO03289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2918-RA | 192..1172 | 32..1002 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:28 Download gff for
FMO03289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2918-RA | 192..1172 | 32..1002 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:28 Download gff for
FMO03289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2273288..2273951 | 351..1002 | 96 | <- | Minus |
| X | 2274026..2274342 | 32..350 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:33 Download gff for
FMO03289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2168059..2168375 | 32..350 | 98 | | Minus |
| arm_X | 2167321..2167984 | 351..1002 | 96 | <- | Minus |
