FMO03290.5prime Sequence
866 bp (866 high quality bases) assembled on 2008-07-09
> FMO03290.5prime
TCAGTGCAACTAAAGGGGGGATCTCGAGGGATCCATAACTTCGTATAGCA
TACATAAAAAAAAGTTATCAGTCGACATGGGACCCAAAAAGAAGTCCGTT
GCTGTAGCTATTGCAGAAACTAAACCAGAAGACCAACCACCACCTGAAAA
GGTGAAGCCAAAGAAAGAGCCCATCCCCGTTTTCGTATTCGATGTTATAG
TCACCCATTTGGAGGCCAAAAATACCGAGTTCACCAATCCATCGAAGCTA
GAAGTCACAGCAAACTTCTTCAAAACTCCACTTCTCCTCACCAATAGTCA
GATAAATGTTAGCGATTTCAAGGCGAATGCCGGTCTCTCCCTTCAAAAGG
ATCCAAAGGAAATTCGTAAGACAGTTAACGATTGTGGGATATCCTTCAGC
GTGGTGTACAGCAAGAAGGTGATTGGCTCCGGGCAGGCATCGTTCCCCTC
CAGCGTAGTGGACTCCATAGAAAAGGACATGACCGATATTCTTCACTCGG
ACGTCATTGATTTGGCTGCAGGCGGCGAGGTGACCGGCAAACTGGAGTTC
CTTTGCCGGTTGGTCGTCATGTGCATTGCTGATGAGCCTGAGCTCGAGTG
CGCCCGTAACATGGACAGGAGCATCAATGCACAGGATATTATGTTCGTAA
TGGGTGAATCGCAGGTGTGTCCCAGTGCCTGTGAACCCTGTCAAAATGAT
TTGGAAGCGGAGGAAGGCGACGAGCGGCTCAGACTGGGACCTGGAACGAT
ATCGCAGCCAGGGTGGTGGTATAAAAGCCATACAATATGATGACGAACAC
GCATCTGGGGATACCAGCGTGTTGTGAACTTTAAGAAAATGGCAATCGAG
TACGAGCGGATGATTG
FMO03290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14355-RA | 3292 | CG14355-RA | 137..928 | 72..866 | 3840 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14151294..14151804 | 582..72 | 2540 | 99.8 | Minus |
| 3R | 32079331 | 3R | 14150966..14151212 | 831..583 | 1050 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:31 has no hits.
FMO03290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:07 Download gff for
FMO03290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 190..987 | 62..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:48 Download gff for
FMO03290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 131..928 | 62..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:27 Download gff for
FMO03290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14355-RA | 131..928 | 62..866 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:27 Download gff for
FMO03290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14150872..14150902 | 836..866 | 100 | <- | Minus |
| 3R | 14150963..14151212 | 583..835 | 98 | <- | Minus |
| 3R | 14151294..14151799 | 77..582 | 100 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:48 Download gff for
FMO03290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9976594..9976624 | 836..866 | 100 | <- | Minus |
| arm_3R | 9976685..9976934 | 583..835 | 98 | <- | Minus |
| arm_3R | 9977016..9977521 | 77..582 | 100 | == | Minus |
