FMO03292.5prime Sequence
1258 bp (932 high quality bases) assembled on 2008-07-09
> FMO03292.5prime
GTATAGCATACATAATACGAAGTTATCAGTCGACATGGAGAAGTACGAGT
GCCAGCCAGAGCCGGTGGAGAAGAAGGAGAAGCCGGTGGAAGAGCTAATG
AACTGGGATGCCTACTACAAGAACCGCGGATTGGTCAGCACCCGATTGGG
CAGCTGCAAAGCGGACTACATGCACTGCTCCACGTACCAGGAGAAGGGTA
ATGCCCAGGAGAAGGACAAGAAGGGTAAGGGCGCGTGCTGTTGCTCCTCC
TGTCCGGTTCGAAACCGGGAAGAGGTATACCAGCCCAGGTGCCCGGCTCC
CGGCCAGAAGGGCAAGCCCAACAGGGACTACATGCGCTGCTTTGCCGCCA
AACTGATCGTTCAGAAGCTCAACATGCCCGGTAGGGACTTCGAATGCCAG
GATAAGCTGCAGATTAAGGCAAACGTGTGCCGCGGGTGCAAGATCTGCCT
TGGTTCCAGCAGCATCAATGTCAACTGTCTTCCACTGAATCCGGACAAGA
CATTCCAGATGGAAGCCGAGTGCCTGCAGAGGCAGCTGGCCGAAGGCATA
AACATATCCGTGGTCTATCTGCGCAAGGAGATCGCACGAGGCTGCTATTT
TCCACCCGCGGCGGTGGTCAGTCGCATGATCAACGATTTTGACGAGATTG
TGCACGATGCGAATGTGGAGCTAACCTGCAAGGGATGCACCGTCGGCATT
ATGAACATCCGCTTCGCCATGCAGATGCGCTGCCAGACCCTCAAAGAAGA
TGCGGTCGATGGACGATTGGCGGGCGGCCAGGGAGCGGGGAGTGTTTTCC
GAACATGAATGTGGATCTCCAGGACCTCTCCTTCATGTCCACCTCTTACA
TTGATCCGTGTGTGGGTTTCATGCCCAGTGATACCGAGGTAGCGCAGGAT
TCCCCCTTCCTTGCAGTGAGGATAGGGCGCAGATTCCTTTTCAATGTCAG
GGATTCCCCCACCTCCGCCTGATCGACATTGGGCGGGTCCTATTCCGTGT
ACCTCCTGTCCCAACGTGACGAAGAATTGATGTGAACTCGAGGCCCCGCG
GGTCCTGCCACTCAGTCCTCCTCCATGACAAAGAACGTTTCTAAGGTAGG
AAATGGCAACGCATTGTGCCAAAGCTATCTTGCGCAAGAACTGCCACGAA
ATGCCACATCACCACCACCCGGATCCTGGGCTCTGCAGCAGAATTTCTCT
TGCTATCCAAGGGTGGCGCCGTGTGCCTTGGCGTGTGTGTCTATAAACAC
ATAGCCCC
FMO03292.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppi1-RA | 3310 | CG31025-RA | 182..1314 | 35..1178 | 4700 | 95.6 | Plus |
| Ppi1-RB | 3376 | CG31025-RB | 182..894 | 35..747 | 3550 | 99.9 | Plus |
| Ppi1-RB | 3376 | CG31025-RB | 961..1380 | 748..1178 | 1150 | 88.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30128389..30128938 | 584..35 | 2735 | 99.8 | Minus |
| 3R | 32079331 | 3R | 30128166..30128329 | 747..584 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 30127900..30128099 | 951..748 | 780 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:46 has no hits.
FMO03292.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:18 Download gff for
FMO03292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31025-RA | 178..1234 | 27..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:54 Download gff for
FMO03292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppi1-RA | 178..1234 | 27..1097 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:43 Download gff for
FMO03292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppi1-RA | 178..1234 | 27..1097 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:43 Download gff for
FMO03292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30127901..30128099 | 748..951 | 95 | <- | Minus |
| 3R | 30128166..30128328 | 585..747 | 100 | <- | Minus |
| 3R | 30128389..30128942 | 27..584 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:54 Download gff for
FMO03292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25953888..25954050 | 585..747 | 100 | <- | Minus |
| arm_3R | 25953623..25953821 | 748..951 | 95 | <- | Minus |
| arm_3R | 25954111..25954664 | 27..584 | 99 | | Minus |
