FMO03294.5prime Sequence
1214 bp (849 high quality bases) assembled on 2008-07-09
> FMO03294.5prime
TCGTATAGCATATATAAAACGAACTTATCAGTCGACATGGCCTCTCCAGC
GAATCCATCGAGCAATCACAAAATGAACGGAAATGGTAAAATCTACTGCG
AGGGCAATCTGCTGCACACCATCCAAACGGCAGTGCCCAAACTATTTGCG
GATTCGAAAACGTTTGTGGACATGAAGCTGAACAATTCGCCCGACAAGAC
CCTCGAGGACTTTAATGCCATGATGGAGGCCAAGAATCAGACGCCAAGCA
GTGAGGATCTCAAGCAGTTTGTCGATAAGTACTTCAGTGCACCGGGCACC
GAGCTTGAGAAATGGACGCCCACCGACTGGAAGGAGAATCCCAGTTTCCT
CGACCTGATCTCCGACCCAGATCTGAAGCAATGGGGCGTCGAGCTGAATA
GCATTTGGAAGGACTTGGGACGCAAAATGAAGGACGAGGTGTCAAAGAAT
CCCGAATACTACTCAATCATTCCCGTGCCAAATCCAGTGATCGTGCCCGG
CGGTCGTTTCATTGAGTTCTACTACTGGGACTCCTACTGGATCATCCGTG
GACTTCTCTACAGCCAGATGTTTGACACCGCGCGCGGCATGATTGAGAAC
TTCTTTTCCATTGTCAATCGGTTCGGTTTTATTCCAAACGGCGGTCGAGT
CTACTACCACGGTCGCTCCCAGCCGCCACTTCTAACCGGTATGGTCAAGT
CGTACGTGGACTTCACCAACGATGACAAGTTCGCCATCGATGCCCTGGAC
ACGCTGGAGCACGAGTTCGAGTTCTTTGTGACAACCACATGTCACGGTGA
AAAATCACAGCCTGTGTGTGTACCGCGATTCGTCGTCCGGACCGCGACCA
TAATCTTACGAGAGGATGTGGAGACCGGCGAGGAGTTCCCCACGGATGAG
GCAAGGACTGCATTACAGTGAACTCAAGGCAGCGCCAATCGGGCATGGAC
TTAGCTCGCGCTGGTCATTCCCACGACTGGAAACAATGAATGGCAACCGG
GCGCTCTTGACACCACCCTCCATTGGGCCGTCGACTTGATGCTATCTTCT
ATGGGACGCCAGTTGAATTGCCCGAGTCCCATTCTAAGCGGGCCAAACCA
AAAGGGTCACCGAAATCAAAAACTAGCCGAAAATCTCCTCGGATATCAAA
GTTGGACAGGGAGCGGTTCTGGGTGCACTTAATGTATTAACGCAAACGCC
TCGCGGAATATATC
FMO03294.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Treh-RG | 2991 | CG9364-RG | 484..1572 | 37..1114 | 4660 | 96.5 | Plus |
| Treh-RA | 2758 | CG9364-RA | 251..1339 | 37..1114 | 4660 | 96.5 | Plus |
| Treh-RD | 2992 | CG9364-RD | 485..1573 | 37..1114 | 4660 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21085448..21086179 | 277..1000 | 3050 | 97.3 | Plus |
| 2R | 25286936 | 2R | 21085197..21085387 | 86..276 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 21077090..21077139 | 37..86 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:12 has no hits.
FMO03294.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:40 Download gff for
FMO03294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Treh-RA | 489..1584 | 28..1114 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:33 Download gff for
FMO03294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Treh-RD | 478..1573 | 28..1114 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:59 Download gff for
FMO03294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Treh-RD | 478..1573 | 28..1114 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:59 Download gff for
FMO03294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21085198..21085387 | 87..276 | 100 | -> | Plus |
| 2R | 21085448..21086273 | 277..1091 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:33 Download gff for
FMO03294.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16972703..16972892 | 87..276 | 100 | -> | Plus |
| arm_2R | 16972953..16973778 | 277..1091 | 95 | -> | Plus |
