FMO03295.5prime Sequence
994 bp (912 high quality bases) assembled on 2008-07-09
> FMO03295.5prime
CGTATAGCATATTAAAACGAAGTTATCAGTCGACATGACACAGCGTTTCG
ATGACTGCGAACAAGTGATCACCGATGGCAGGCGAAACTTCGACAGCGAA
ATCCTTTCACCGCCCGGCAATGACGAAATCAAGGAGGATCAATGGATGGG
CGTTACGGTGCGTTCGAATCCCCTACAGGCCAACGGATCCGGCGGAAAGG
TAATCGTCTGCGCCCATCGCTATATGTACATCGTCCGAGAGAATCGTTAT
GGACAGGGTCTCTGCTATCTCCTAACGAACGATCTGCAATTCGAAGAGGT
CCACGAGCCCTGCAAAGGACGACCTGTGCAAAGGCAACACGAAGATTATG
GACTGTGCCAGGCGGGCACATCGGCTGCCCTACTGGACGATGACACCATG
GTGTTGGGTTCCCCTGGACCGTACACATGGCGCGGATCCATTTGGGTGAC
TCAGGTGGGCGGGGAGTACCTGCAGCGCGACAAGACGACCTACTACAGTG
ATCATTCGGACTTGAATTCGCCGGTGGACAAGTACAGCTATCTTGGTATG
TCGGTGACCGGTGGCAGATTCTTTGGTCACATGTCATATGCGGCTGGAGC
TCCACGATCCGAGGGTCATGGACAGGTGGTGATTTTCGACAAGTCCCACC
GATAATCCAATACCGGTGCACTCGATCCTGGATGGTGAGCAATTCGGTTC
GAGTTTTGGCTATGAACTGGCAACCGCCCGATATAAACGGAGATCACAGG
CCGGATTTAATAGTGGGCAGCTCCTTTTGTACTTCACAAAAACGGAAGGT
GGGAGCTGTGTATGTGTACCAGAATATCCAGGATACGTTTGCCCATGAAG
TACACACTCAAGTTGACGGGACCTCTGGAGAGTCCGTTTCGGTCTGGCGT
TGGCCAATATCGGGAGATCTGAACAAGGATACTTGCGAGGATCTGGGCGG
TGGGAGCACCTTACGAGGGGCAACGGCGTAATCCTACATTCTAC
FMO03295.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mew-RE | 3863 | CG1771-RE | 253..1196 | 35..989 | 4425 | 98.3 | Plus |
| mew-RF | 4254 | CG1771-RF | 644..1587 | 35..989 | 4425 | 98.3 | Plus |
| mew-RB | 5001 | CG1771-RB | 644..1587 | 35..989 | 4425 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13218028..13218666 | 980..332 | 2685 | 97.8 | Minus |
| X | 23542271 | X | 13219747..13219883 | 334..198 | 685 | 100 | Minus |
| X | 23542271 | X | 13220030..13220146 | 203..87 | 585 | 100 | Minus |
| X | 23542271 | X | 13224984..13225035 | 86..35 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:41 has no hits.
FMO03295.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:41 Download gff for
FMO03295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 627..1579 | 29..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:38 Download gff for
FMO03295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 639..1591 | 29..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:07 Download gff for
FMO03295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mew-RB | 639..1591 | 29..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:07 Download gff for
FMO03295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13218016..13218664 | 334..994 | 97 | <- | Minus |
| X | 13219748..13219881 | 200..333 | 100 | <- | Minus |
| X | 13220034..13220146 | 87..199 | 100 | <- | Minus |
| X | 13224984..13225042 | 29..86 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:38 Download gff for
FMO03295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13112049..13112697 | 334..994 | 97 | <- | Minus |
| arm_X | 13113781..13113914 | 200..333 | 100 | <- | Minus |
| arm_X | 13114067..13114179 | 87..199 | 100 | <- | Minus |
| arm_X | 13119017..13119075 | 29..86 | 93 | <- | Minus |
