FMO03301.5prime Sequence
741 bp (709 high quality bases) assembled on 2008-07-09
> FMO03301.5prime
AGCATACCCAAAACAAAGTTATCAGTCGACATGGCGCTTAAGCGGCACAT
TTACCACATCGGCACCCGCTACATCGAGGTGTACCGGGCATCGGGGGAGG
ATTTTCTGGCCATTGCCGGCGGAGCCTCCAATGAGGCGCAAGCCTTCCTT
TCGAAGGGCGCCCAGGTGATCATTCGCATGCGGGGATTACCATACGACGC
CACCGCCAAGCAAGTGCTGGACTTCTTCACCACTGGGGATACTCCGCCCT
GCCATGTTCTTGACGGGAATGAGGGCGTGCTGTTCGTTAAGAAGCCGGAT
GGACGGGCCACGGGTGATGCCTTCGTGCTATTCGCAAACGAGACGGATGC
GCCCAAGGCGCTGGGCCGGCACCGTGAATCCATTGGGCAGCGGTACATTG
AGCTATTCCGTTCCACGACCGCCGAGGTGCAGCAGGTGCTCAACCGGTCG
ATGGACCCCAAGAACTATGAGTCGGGCGGTGGGCACAGCCAGCCGCCGTT
GATTGCCCAACTGCCCACGATGCAGCTGCCGCTGCTGCCGCAGGTGGGTG
CCCACAGCCTCAGCCACAGCCTCGGAGCCAGCCCCGCTAACCTGTGCCCC
CCCGTGCCACCTCCCGCTCTCCCTCTCCCCACACAGCACCTCATCACCTC
GGGCACCACCAAAAAACTGCATCCGACTGCGCTGACTGCCCTACGAGGCG
ATGGTCGAGCACATTTCTGCATTTCCTCGATGACTTTTGCA
FMO03301.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fus-RC | 3671 | CG8205-RC | 1345..2053 | 27..737 | 3430 | 99 | Plus |
| fus-RD | 5256 | CG8205-RD | 1345..2053 | 27..737 | 3430 | 99 | Plus |
| fus-RF | 5243 | CG8205-RF | 1332..2040 | 27..737 | 3430 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15663280..15663799 | 737..216 | 2480 | 99.2 | Minus |
| 2R | 25286936 | 2R | 15663919..15664108 | 216..27 | 905 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:59 has no hits.
FMO03301.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:11 Download gff for
FMO03301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RA | 431..1148 | 17..740 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:43 Download gff for
FMO03301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1325..2042 | 17..740 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:45 Download gff for
FMO03301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fus-RF | 1325..2042 | 17..740 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:45 Download gff for
FMO03301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15663278..15663798 | 217..740 | 99 | <- | Minus |
| 2R | 15663919..15664115 | 17..216 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:43 Download gff for
FMO03301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11550783..11551303 | 217..740 | 99 | <- | Minus |
| arm_2R | 11551424..11551620 | 17..216 | 96 | | Minus |
