FMO03305.5prime Sequence
1253 bp (1002 high quality bases) assembled on 2008-07-09
> FMO03305.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACGGCCAATTT
GTTAAACCTGAACGTGGACACGCTGTTTGAGCAGCACAGCGTGTCCGAGA
TAGACGAGGTGCACAAAAAGATCCAGTCGGTGGTGGAGAACAAGCGCGAG
GAGTTGCGCACTCATGTCGGGGAGCGGTACCGAGATCTTTTGCAGGCGGC
TGACACCATTGCTGCGATGCAAACGTCGGCCGGGACACTTATGGAGCAAG
TGCGACACGTGCAGGCCAATTGCCGCAGTCTAAACGAGCAGCAGCTCCTG
GGCTTCCAGTCAACTGCCAATGCAAGTGCTAAAGATGCCGCACTGAAGGA
GAGGAACGCCGGAAAAAAGCTGCAGACCTACTACGGCACCATGGCTCAGA
TTAAGTTGCTTACTGCCCTGCCGGAACTAATCTGGACGCACTTGGACAAC
GATCGCTTCTATGCCGCTACTGAGTTGTTCATCTTCAGTCGCCACATCAG
CACGGGCTTGCAACTGGACGGCCAGAGTGCCCTGATGCAGAAACTACCGG
TAGCGCGCAAGCAATGGGAAATCCTGCGTCCCTTTCACGTGACCATCAAA
CAAGCCATACTGACCGCACTGGAGAGGGAGGAACTCCTACAAGAAATGAC
TGTGGACTGCCTGCAGAGCCTTCTCTTGCTAGACAAAAGCGATTTGAGTA
CTGTGCTGAAATCCTTCTTGAACCTGCGCTCCTCAGCCTTTCTGAACTGC
CTGCAAAGCGGTCCATCGGAGCCACGTCGCGTCAAGGATCGCATTTTGGC
TAGCTTAAACGTGCTCAACAGCACCGTGGAGCTTCTGGACAAGTGTCTTT
TGGGTTATAGCCTTCTTTTTAGCCGCTTGGAGGAGTGTGCCTCTTCTACG
TGTCCACCCAGCATCAACCGAATGGGAGAGTAGCGAGCGCCAGCTGGTTC
ATCTTTTTACCCGAAATCATCGCTGGTTTTAAGCCACACATTTGATGTAC
CTCAGCTAACACCTGGAGCAGTTTGGGTTCTTCACTTCAACAATGGCCTA
GATAAAATGAACGCCTTGGCAGCGGCTACCTTGCAGCCAGGTCTTTGGAA
TAGTCAAACAAGGCAAAACAATCCAGGGAAATTAGTCGCGGTCAGAACTA
TGGGTCGACTGGATATTGTTCCGCCTAGAACCGAATGCATCTTAACGTAG
CAAGTTAGACTTCTCCACCCCAAAAGTAATCGTGCCCTGTGATATATTAC
AGG
FMO03305.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4848-RC | 4785 | CG4848-RC | 83..1256 | 37..1214 | 5230 | 97 | Plus |
| CG4848-RB | 2973 | CG4848-RB | 83..1256 | 37..1214 | 5230 | 97 | Plus |
| CG4848-RA | 2919 | CG4848-RA | 83..1256 | 37..1214 | 5230 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12218730..12219415 | 855..170 | 3430 | 100 | Minus |
| 3R | 32079331 | 3R | 12218436..12218664 | 1087..853 | 845 | 96.6 | Minus |
| 3R | 32079331 | 3R | 12219470..12219604 | 171..37 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:17:23 has no hits.
FMO03305.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:44 Download gff for
FMO03305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 87..1121 | 37..1077 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:44 Download gff for
FMO03305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 83..1117 | 37..1077 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:29 Download gff for
FMO03305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4848-RA | 83..1117 | 37..1077 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:29 Download gff for
FMO03305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12218446..12218663 | 854..1077 | 97 | <- | Minus |
| 3R | 12218732..12219414 | 171..853 | 100 | <- | Minus |
| 3R | 12219471..12219604 | 37..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:44 Download gff for
FMO03305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8044168..8044385 | 854..1077 | 97 | <- | Minus |
| arm_3R | 8044454..8045136 | 171..853 | 100 | <- | Minus |
| arm_3R | 8045193..8045326 | 37..170 | 100 | | Minus |
