FMO03306.5prime Sequence
1260 bp (1054 high quality bases) assembled on 2008-07-09
> FMO03306.5prime
GTATAGCATAATAAAACAAAGTTATCAGTCGACATGGGGAAAATGGTCAG
CGAGGAAATGGCCACGGATCCGGTGGTCTCGGAAAAGGTGGAGCTATCGC
GATTCGGAGAGTTCTGCCAGCGGCGCGGCATCAATCCCAACTTGATAATG
CTGAAGATAACCCTTTTCGTGATGTATGGCGCGACCTCATCCCTGCTGCC
TTACCTAACGATTCACATGCAGTCGATTGGACTCACGGTGGAGGAGATTG
CCATCATCTACCTGGCCCTGCCCTTCACCACCTTCCTTAGCCCGCCCATA
ACAGGCTTCCTCGTTGACAAATTTGGCAAATACAAACCGGTCGTTGTGAT
GAGTCTGCTCCTGAATGCGATTTTCCACCACTCGCTGCTCTTTATTCCGC
AGCAGGAGATTCCGGGCGTGGTGCCATCGGCGTTCGTATTGAGACATCCA
GACAGCGGCGACATCGAGGTCTGGTGGTCGCCGTGTCCGAGTCGTGAGTG
TCCGGAGGAGCCGGAGCTGGAATTGGCCGTGCATCAGTGCGTCGACTATT
GTTTGATGCAGGAGCAAGTTAATCCCCAGCTTTACACGAATACCCCGGCG
TATGATGTGCGCCCGGCAGCCACCACGTCCACCACGCAGAGATCCCAGCT
AACAGCAACCACAGCAAGGACGACCACAATGGAACCCTCCTCGGAATCGA
GCTCATCGCCGGCCCCAACCACATCGACCACCACATCGCCGGCGTCATCA
TTGCCAGCATTATTTCGCAACGCAAACGAGGAGCAGATACCAAGAAGTAC
TTAATATGTCATCGACCATGTTCCCGCCGATGTCCCAGTTTGAAGGACGC
GTTGGAGGAGGGTGTGGAGCCCGGGCAGTCATCGTCAGCCGAACTGTCTG
CCATGTCCATGCAGGGATTGATTTGACAAACAGCAGCCAGAAGAAGGTTG
CTTTGGGAGCAGTTGGGTGCACTCGGACACGACGATGCCACCTACTTCAT
GCTGCAATGCATCCCGATCTCGCCGATCCCACCGAGCACTGGGCATGGAA
ATCGAACAGGACGCCAACGAAACCGTCACCGAACTTCCTGGAAAAATTCG
GGTCATGGACTTACTTGGTCAGGTAACATAACCCTCACCGAAATGGAACG
ATCTGAATTGGAAGCGGCGGCTGGGTCGCCCGCACGAATGACACAATGCC
ATCTTGGGACCCGTTGAGGCTGAATGCACCGGTGTCCTCTCACGTTTGAG
ATATGCCGCC
FMO03306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31663-RC | 3846 | CG31663-RC | 727..1881 | 34..1189 | 5210 | 97.5 | Plus |
| CG31663-RB | 3570 | CG31663-RB | 559..1713 | 34..1189 | 5210 | 97.5 | Plus |
| CG31663-RA | 3678 | CG31663-RA | 559..1713 | 34..1189 | 5210 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1869073..1869529 | 925..467 | 2180 | 99.3 | Minus |
| 2L | 23513712 | 2L | 1875010..1875178 | 470..302 | 845 | 100 | Minus |
| 2L | 23513712 | 2L | 1879967..1880114 | 181..34 | 740 | 100 | Minus |
| 2L | 23513712 | 2L | 1876468..1876592 | 305..181 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 1867206..1867365 | 1082..924 | 545 | 96.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:36:19 has no hits.
FMO03306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:38 Download gff for
FMO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31663-RA | 531..1656 | 34..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:39 Download gff for
FMO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31663-RA | 559..1684 | 34..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:38 Download gff for
FMO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31663-RA | 559..1684 | 34..1162 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:38 Download gff for
FMO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1867129..1867365 | 924..1162 | 91 | <- | Minus |
| 2L | 1869074..1869527 | 469..923 | 99 | <- | Minus |
| 2L | 1875012..1875175 | 305..468 | 100 | <- | Minus |
| 2L | 1876469..1876591 | 182..304 | 100 | <- | Minus |
| 2L | 1879967..1880122 | 28..181 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:39 Download gff for
FMO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1867129..1867365 | 924..1162 | 91 | <- | Minus |
| arm_2L | 1869074..1869527 | 469..923 | 99 | <- | Minus |
| arm_2L | 1875012..1875175 | 305..468 | 100 | <- | Minus |
| arm_2L | 1876469..1876591 | 182..304 | 100 | <- | Minus |
| arm_2L | 1879967..1880122 | 28..181 | 96 | <- | Minus |
