FMO03307.5prime Sequence
1248 bp (987 high quality bases) assembled on 2008-07-09
> FMO03307.5prime
ATAGCATACATTAAACGAAGTTATCAGTCGACATGCCTTCCATTTTCCGC
TTTCGTCTGCCTTTTCGCCGCAGCGAGTTACCCGAAACCGGTCTCCTGAA
TACCTATGACGAGGACTTCACCTCGTCCGCTGGGTACGATGCAGATGATG
GGGAGAGGCGTATCATAAACCTAAATGGGCCACAGCCCACTAAGTACGGT
AATAATCGCATAACGACGGCAAAATATAGTTTCATCAGCTTTTTGCCCGC
GTTCCTGTTCGAGCAATTCCGGCGTTACTCCAACTGCTTTTTCCTGCTAA
TTGCCATACTGCAACAAATCCCGGAGGTGTCGCCGACGGGTCGTTACACC
ACGCTAGTGCCACTGATGTTCATCCTTTCGGTGAGCGCCATTAAGGAGAT
AATCGAGGACATTAAACGACATCGGGCGGATAATGAGATCAATCACCGAT
CGATAGAGCGCCTGGATAGTGGCTCGTGGTGCACAGTTCGCTGGTCGGAG
TTGACGGTGGGCGATATCATCAAAGTGGGAATCAATACCTTCTTCCCCGC
CGATCTGATTCTGCTGTCGTCCAGTGAACCGCAGGCCATGTGCTTCATAG
AGACGGCCAATTTGGATGGTGAGACCAACCTGAAGATTCGACAGGCCCTC
CCAGCCACCGCTGAACTGCTGGAGACGAAGGATCTGCAACGATTGGAGGG
CAGGATCGAGTGCGAGCTGCCCAACCGGCATTTATACGAGTTTAACGGAG
TGCTCAGGGAAACTGGAAAGCCACCCGCTGCTTTGGGCAATGATCAGGTG
CTCCAACGTGGCGCCATTCTTCGGAACACGGCATGGGTGTTCGGGATCGT
GGTCTACTCCGGGGCAGAGACGAAGCTGATGAAGAACTCTACCTCGGCGG
CCATTGAAGCGCTCAACCGTAGACAAGCTGACCAAACACCCAGATCCCTC
ATGCTTTTCATGATCCTCATCTCATTGTGCATTCATCAGCGGCTTGTTGC
AATCTGTTTTTGGACAAGGAAACAATCCGGAAACGGACTGTACTTGGCCT
AACGGACTTCAGGACCAGAGCCTTGGCTACAACCTGCTGACCTTCTTCAT
TCTGTTACAACACCTGATCCCCATCCTGCTTCAAGGTGACGCTTGACTTG
TGCGTTTCTCAAGCACATTTTCTAACTACGACATTGAATGTATTACGAGG
AATTCACCCAGCCGGCATTGAGCGCCGCCAATCCTCGAACATCTATGA
FMO03307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RM | 4261 | CG42321-RM | 269..1439 | 33..1203 | 5195 | 97.1 | Plus |
| CG42321-RL | 4552 | CG42321-RL | 373..1543 | 33..1203 | 5195 | 97.1 | Plus |
| CG42321-RK | 4658 | CG42321-RK | 373..1543 | 33..1203 | 5195 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13421326..13421707 | 1158..773 | 1100 | 92.1 | Minus |
| 2R | 25286936 | 2R | 13421839..13422039 | 772..572 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 13422320..13422505 | 413..228 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 13422099..13422259 | 574..414 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 13422602..13422725 | 229..106 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 13438607..13438679 | 105..33 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:40:52 has no hits.
FMO03307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:18 Download gff for
FMO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17034-RA | 254..1439 | 25..1210 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:29 Download gff for
FMO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RK | 364..1549 | 25..1210 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:10 Download gff for
FMO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RK | 364..1549 | 25..1210 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:10 Download gff for
FMO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13422602..13422725 | 106..229 | 100 | <- | Minus |
| 2R | 13422099..13422259 | 414..574 | 100 | <- | Minus |
| 2R | 13422320..13422503 | 230..413 | 100 | <- | Minus |
| 2R | 13438607..13438688 | 25..105 | 95 | | Minus |
| 2R | 13421271..13421707 | 773..1210 | 91 | <- | Minus |
| 2R | 13421839..13422036 | 575..772 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:29 Download gff for
FMO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9310107..9310230 | 106..229 | 100 | <- | Minus |
| arm_2R | 9326112..9326193 | 25..105 | 95 | | Minus |
| arm_2R | 9309604..9309764 | 414..574 | 100 | <- | Minus |
| arm_2R | 9309825..9310008 | 230..413 | 100 | <- | Minus |
| arm_2R | 9308776..9309212 | 773..1210 | 91 | <- | Minus |
| arm_2R | 9309344..9309541 | 575..772 | 100 | <- | Minus |
