FMO03309.5prime Sequence
1064 bp (963 high quality bases) assembled on 2008-07-09
> FMO03309.5prime
AGCATACATAATAAGAAGTTATCAGTCGACATGGGTTTAAATGCCAAGAG
TGTTTGTTCTACCAGCAGCACTGAGCCAAATGGCAGCATAGTCACAACCG
CCCCCAGCAACGGAGAAGTGAGCAGCAGCATAGTCGTCGTCGTCAGCAGC
AGTAGTATCAGTAGCAGCAGCGATAGCCCAATCGCTATCCTTCCACATCC
AGATCCAATCCCATCAACATCGTTCTCTTCAGCGTCGCAACGAAGTGAAG
AGGAGCTACCAGGAACCTCAGCAGCCTCCAGAACCGACGAGATGTGCTCT
TGTGATAGCCAGAATCTTGCAGCATCCACAGCCGCGACTTCCAATGGCAA
TAAACGTAAACGGCGTTTAAGCAGCGATTCAAACGAGGACCCTGAACTCG
GTTTTGAGCCTCCATCAGCTAAGCGCCAGCAGCGACTGCCCGCTTTGTAC
GGCAGCGAGCAGGGCAATCTGTCATCGGTTGCCTCCTCGGTCTACACCTC
GCCCGTTGTCTCGGTTGATGGCCAGAGTACCCAGGAGCTGCTCAGCATAC
GTAGCTCACCGGCCGAGGATCTGTCGGAGGCGCCACACAGTCCGCTGCCG
GACAGCCCGGACAGTCCGCCGAGTCCGGATCGTGGAAGCAAGCAGACGCC
AGTGGTGGTGCGCTACGCTGCGGAGCAGGTGGTGACCAGTACGGTGGTCA
CGCAGAAAGACGGAGGATGATGACCTTTTGGACGACAGCTGCGAGGACTA
CTCGTACGACGAGGATGATGAGGATGACGTTGAGGAGGAGGACGACGACG
TGTAGATCTACTCCTTCCACAATTTTCTCCAGCCTTCTTCGGCTGCAGCC
AGCAGCAGGCGGTGATGGAGAGCGTACTTCCCGGCCTGCCAAAACATCAG
GAGCAGATCCATCATCCGGTCAGTGACTTGATGATTAACATGCGGACGCC
CATGTCGCCGGCTGTGGAGACCGGTCTGCGCCGTTGCCACTTCCTGCCGC
CCGCCTGGGCTAACGCCGCGATGTTTGGCGCTGATGGTGCACCGGGAATG
AGCAGACTCCGCGT
FMO03309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycE-RD | 3946 | CG3938-RD | 517..1539 | 31..1055 | 4730 | 98.1 | Plus |
| CycE-RE | 3703 | CG3938-RE | 274..1296 | 31..1055 | 4730 | 98.1 | Plus |
| CycE-RA | 3653 | CG3938-RA | 427..1449 | 31..1055 | 4730 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15730195..15730838 | 1031..386 | 2725 | 97.5 | Minus |
| 2L | 23513712 | 2L | 15737627..15737966 | 388..49 | 1700 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..7016 | 58..364 | 200 | 56.1 | Plus |
FMO03309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:39 Download gff for
FMO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RC | 264..1295 | 31..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:42 Download gff for
FMO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RA | 427..1458 | 31..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:51 Download gff for
FMO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycE-RA | 427..1458 | 31..1064 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:51 Download gff for
FMO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15737628..15737964 | 51..387 | 100 | <- | Minus |
| 2L | 15740772..15740791 | 31..50 | 100 | | Minus |
| 2L | 15730162..15730836 | 388..1064 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:42 Download gff for
FMO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15730162..15730836 | 388..1064 | 96 | <- | Minus |
| arm_2L | 15737628..15737964 | 51..387 | 100 | <- | Minus |
| arm_2L | 15740772..15740791 | 31..50 | 100 | | Minus |
