FMO03310.5prime Sequence
1077 bp (987 high quality bases) assembled on 2008-07-09
> FMO03310.5prime
CTTCGTATAGCATAATAAAAAGAAGTTATCAGTCGACATGGATAGCTTGG
AGAACCACCAGGAGGAGCTGCACCACCAGCCGAGGGTCACCTTGGCGTAC
GGCAGTGTGGCCACCAGTTCGGGTGGACAGGAAAACCATTCCCAGTATGC
GATGTACTATAATCAGCAGAGGGATTCGGAGGGCTACATGCTAATGACGC
CCTTCCTGTCCAGTTCGCAGAGCCACAGCCACACCCGTTCGCCGCCCACG
TACACCGCCATGGTGGAGCCACGTCGCGAAGAGAGTTCTGGATTTGAGGG
CTTGGCCAGGCGGTGTGACAAGTGCAGTTCGCTGGACGGACTCTGCCGCT
GCGAATCGATGGTGGCCAGTAGCAGTCGCTATGCGGACTCCACACAGAAC
CAGTCGCATTCGGAGGCTCAGTTCTTGGAGCAGCCCTCATCCTCCACAGC
GGCGATCGCCAATCCGCCCGCTGTTCATTCCATTCCACGACCCAAGCGAA
AGAAGACTGAACCCCTGACAATGGAGCCAGAGAGTGACAATGACGGCGAC
GCGGTGGTTGCGTCCGTCAGCGGCACATGGCCTGCCGGTGCTATAGAAGA
GCATGCTATGGACTCTACGGCGGTCGTTTACGAGGTCCCCCTCTAGTTCG
CTGCAGCTCAGCAACAGCTCCTTCGAAACCGCCCCAAGGACCCGTAAAAT
GCTTACGATGATGTGACATCGAGTGCCTCGGGACACGGAGCACCGGCCAG
TTTGCTCATACGCGTACCACCAACACCACGACGACTACGTCTGCCGTTCA
GGCTCACAAGAAGAAGGCCAGCCCGCTCCAATAATGCCTCCCAACACCTC
TTCCAGAGCAGTAGATACGGATGCCACGCCAAGCACGAGTGCCCAATCGA
GAAAGCGACAGAATGAGTCAATTTTCTTATCGCAAATCAAGGGTTTTGGA
GCCGGAAAACGAGAGCAGCGATGATGGCTGGGATTTGCGTGTGCATAATC
CCGTTCCACCAATTGAGCCCACAGTAACGATTATTCGTGGTAGCAGGGGT
CCTGACGTAGGCCGAAGAATAAGGTCA
FMO03310.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6923-RC | 4629 | CG6923-RC | 403..1421 | 38..1065 | 4810 | 98.5 | Plus |
| CG6923-RD | 4544 | CG6923-RD | 318..1336 | 38..1065 | 4810 | 98.5 | Plus |
| CG6923-RB | 4363 | CG6923-RB | 137..1155 | 38..1065 | 4810 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11747831..11748734 | 1049..138 | 4120 | 98.6 | Minus |
| 3R | 32079331 | 3R | 11748790..11748889 | 137..38 | 485 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:52:49 has no hits.
FMO03310.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:43 Download gff for
FMO03310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6923-RB | 134..1159 | 35..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:41 Download gff for
FMO03310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6923-RB | 134..1159 | 35..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:00 Download gff for
FMO03310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6923-RB | 134..1159 | 35..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:00 Download gff for
FMO03310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11747812..11748734 | 138..1071 | 98 | <- | Minus |
| 3R | 11748790..11748892 | 35..137 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:41 Download gff for
FMO03310.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7573534..7574456 | 138..1071 | 98 | <- | Minus |
| arm_3R | 7574512..7574614 | 35..137 | 98 | | Minus |
