FMO03312.5prime Sequence
977 bp (941 high quality bases) assembled on 2008-07-09
> FMO03312.5prime
GTATAGCATACCTTATACAAAGTTATCAGTCGACATGTCGAAGTTTCTGG
GCGTGCCGCTGAAGAAGCCGTCGGAGGTGGATGTGATCAAGCCGCTGAAC
AATCTCATCCAGAGCACCTACAACGGTGCGTCGGAGGAGGAGAAGGGCAA
GTACGGAGAGGCCGTCAACGAATTTTCGAAACAACGCAATACGGCAATTT
GGAAATTCTTTGAAAAGTACGAGGCTTCGCTGGAGATTGTGTACGCCTAT
TATGACCAGATTTGTGCGCTGGAGACCAAGATATCGGTTAGCGAACTTCA
GATACCCTTTAAGTGGAAGGATGCCTTCGACAAGGGCTCCATTTTCGGCG
GCAAGATCAGCCTGACTCACACCTCCTTGCTTTACGAGAAGGTCTGTGTG
CTCTTCAACATTGCCGCCCTGCAGAGCAACATCGCTGCCAACCAGTCCCT
GGATTCGGATGACGGCCTTAAGCTGACCATCAAACTGCTCCAGCAGAGCG
CCGGCATCTTTCAGTATTTGAAGGGAGCGACGCCAGCGGCAGTGCCCTCG
GAACCCACGCCCGATCTCAGCCAGGATACGCTAACCGTGCTGCAGGCTCT
GATGGTCGCCCAAGCGCATGAGGTTTTCATTCTGAAGGCAATTTAAGGAT
AACTTGAAGGACCAGATCATCGCCAAGCTTTGCTGCCAGGCGGAGGAGTC
TTACGCCGATGTGCTGCGCGCTATGCAAAAGGAGTCTGTGCGCAGCCTGT
GGGAGAAGGAGTGGATACCTACTATTGCTGGAAAAGCAGGCCGGCTTCCA
TGCCCTCACCCAGTTGTACCAGAGTCTGGTGTGCCGTGCCGCCAAAAGAT
TGGCGAGGAAATTGCTCGCTTGCGCACGCCATTGATCTTTTCAAGGCGGC
TCAACGCGTACGGAATGAAACCTACTTGGATGATACTTCAGCGGCGCCAA
GCGCAACTTGGACCGAAGTTCACCAAG
FMO03312.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ALiX-RA | 2892 | CG12876-RA | 132..1076 | 35..977 | 4420 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27699090..27699367 | 643..366 | 1375 | 99.6 | Minus |
| 3R | 32079331 | 3R | 27698414..27698731 | 960..648 | 1205 | 96.2 | Minus |
| 3R | 32079331 | 3R | 27699768..27699979 | 246..35 | 1060 | 100 | Minus |
| 3R | 32079331 | 3R | 27699435..27699553 | 365..247 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:33 has no hits.
FMO03312.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:20 Download gff for
FMO03312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 267..1211 | 35..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:11 Download gff for
FMO03312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..1076 | 35..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:52 Download gff for
FMO03312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ALiX-RA | 132..1076 | 35..977 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:52 Download gff for
FMO03312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27698399..27698730 | 649..977 | 96 | <- | Minus |
| 3R | 27699086..27699367 | 366..648 | 99 | <- | Minus |
| 3R | 27699435..27699553 | 247..365 | 100 | <- | Minus |
| 3R | 27699768..27699979 | 35..246 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:11 Download gff for
FMO03312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23524121..23524452 | 649..977 | 96 | <- | Minus |
| arm_3R | 23524808..23525089 | 366..648 | 99 | <- | Minus |
| arm_3R | 23525157..23525275 | 247..365 | 100 | <- | Minus |
| arm_3R | 23525490..23525701 | 35..246 | 100 | | Minus |
