FMO03313.5prime Sequence
1227 bp (836 high quality bases) assembled on 2008-07-09
> FMO03313.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGTTCAGGAAGAG
GAGGAGCCCTTTAGAGGGACAAACACTGCGGAGGCACCTGCTTTGGAGCC
CCAATTCGAGGAGACTCAGCACCAGATAGAGGATGACGTGGAAATGCTGC
CAGCCGAAGCTGCTGGGGTTGATGAAAAGAGCTCTTCCTTCCCGTTTGGC
ACGGTGGCGGAGCTGCATTCATAGACTAGTGATGATATTAAAGAGACACG
CGGTCAGGCTGGCGTGGACACCCTACTGGCTTCTTTAGCCGGCGATAATG
CCAACAGCCTGCCCTCCGTGGGTGGAAATGACGAGAGTGACAATGTCAAG
AAGGCGGACTTTGAGTACAATGTACACTCCCTGCAGCCGCAGATGGAGAA
AATGAATTCCTCTGAGGACTCCAGCTCACAACATGCCATTGCCGAGGATC
TGGCCGATGCGGACACCAGCAATGCAACCATTGTCAACACAGAGATAGTC
TCCGAGGATGAGCTACCTCTGCCCAGCAAGCCTGAAATAAATGATGCCGA
GGAAGTTACCGATGAAGAGCTTCCAGCACCGCAGCGGGCTGAATTGCCAG
AGGATGCTGAAGTAATCTCGGAGGATGAACTGCCCGCCAGTAATAACAAT
AACACCGCCACTGAGCCCAAGGCACCTTTGAAGCGCAAGGCGGAAAACGA
AAGCGTTAAGAGCACCGAAGATAAAGGATGCAAGCAGTCATGAATCAAGC
ACAAAGGATAATCCTCCGAGCAATATAATCCGGGCAGTCCCACATCTGAG
AGCACACACGCACAGCCCTCAGAGAAAAAACTCAAGGTCGAAAATCGGAG
CCCAATGAGAAAAGAAGGAAAGGAGCGCGATAAAGATAACGAGAAGGATA
GGACAATGATATAATAAGGTTAAGGAAAGGAGCGAAGGACGCTGCCGGAC
TAGATAGTAACTGGAGAAGCTCGTCAAGGAAGACTCCACCGACTTCACGG
GCTGGAACGTACTTGCTGCATAATGTTGATCAATGAATTCTGATGCGAAG
GCGGGCGCGAGGCTTACAAACAATTCCTGTCCCACTTTCTTTACTGCTAC
GTATTTGGACCCAGGTAAGCGACTTACCAGACGCCAATGCTTCAGCAAAC
TGCTTAAGGGTTGAGCGCGAACTGAAGTCATTCGTGTTTCGGATCTGGTT
GAATATCATATGCCGAGAGCGAGTATA
FMO03313.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1646-RE | 3582 | CG1646-RE | 361..1510 | 35..1174 | 4595 | 94.8 | Plus |
| CG1646-RC | 3573 | CG1646-RC | 352..1501 | 35..1174 | 4595 | 94.8 | Plus |
| CG1646-RA | 3563 | CG1646-RA | 342..1491 | 35..1174 | 4595 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28812743..28813550 | 35..842 | 3855 | 99 | Plus |
| 3R | 32079331 | 3R | 28813618..28813807 | 843..1029 | 320 | 88.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:19 has no hits.
FMO03313.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:25 Download gff for
FMO03313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1646-RC | 333..1328 | 29..1020 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:50 Download gff for
FMO03313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1646-RA | 336..1331 | 29..1020 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:05 Download gff for
FMO03313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1646-RA | 336..1331 | 29..1020 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:05 Download gff for
FMO03313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28812733..28813551 | 26..842 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:50 Download gff for
FMO03313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24638455..24639273 | 26..842 | 98 | -> | Plus |
