FMO03315.5prime Sequence
1245 bp (1000 high quality bases) assembled on 2008-07-09
> FMO03315.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTAATTCCAG
TTCCATTTGCGCCGATCGCAATGTCATAACAAATTTCGATGAAAATGGCA
CGCCGGTTTATCCCACCGCCAACAATTCGCAGAGTCCTTCCTCATATAGT
CGCGGCAAAGAGCGCGAGCTCGGCTGTTACACGAAGAGAAACAGCAACAG
CAACAACAACAATAGCCATGAGAGAGAGAGTCAGAGCTGTTGTAGTAGTC
GTGTGTGTAAAAATCATACGACCACAACGACAACCACACTCGAATACGAA
CTTTCCAATTTCGCAAAACTAACGACACGAATCACAACGCAAAGTGCCGC
CGAAGTGGACACATCGCCGCATACGGATACGGAAACGCATAGGGACAGAG
ATTCGAATCCGGGTAATATAGCCTTAGCCACCGATTTGGAACTGCCCAAG
GGTCTGCCGTTATCGTTATCCTCGCGACACCACTGGAATCAGCTGCAGAG
CAGTTTGCACGCCCTTCACCACCAGCAACAGCAACAACAACAGCAACTAC
GTTCATACAGCTCCACTAGCGAAACAAATTTGGAAGACAAGATGAGCAAA
CCCGATTCGAAACTAGATAAATACGCGCAGCGCGATCGCCTGGGCCTTTG
GGGCACTGGTGACAATGAGGTGGTCGGCAGCCTCTCCGGATTCACCCGAC
TCTTGGACAAGCGCTACTCAAAGGGCCTGGCCTTCACACACGAGGAGCGC
CAGCAGTTGGGCATCCATGGCATGCTGCCCTATGTGGTCCGTGAGCCCAG
TGAGCAGGTGGAGCACTGCCGCGCTCTGCTGGCGCGACTGGATCAGGATC
TGGACAAGTACATGTACCTGATCAGCCTATCGGAGCGGAACGAGCGTCTG
TTCTACAACGTGCTCAGCTCAGACATCGCCTACATGATGCAACTGGGTGT
ACACGCCCACCCGTGGGATTGGCCTGCCAGCGCTACCAGTTTGATTCAAC
AGACGCCAGGGCATGTCCATATTCCATCAAGGACAAGGGACACATCCTAC
GACGTGCTAAGAACTGGCCGGAAACCGGAATGTGCGGGCCATCGTTGGCA
CCGGACGGCCAGCGCATTCCTGGGACTGGGAAGATCCGGGCCCACGATGG
GGTAATCCGTGGGACAACTGTCCCTGTTATACGGCCTGTGCGGACTTAGC
ATCGCCAATTGCCTGTTCATATCACTTGGATGATGGGGGGACTAC
FMO03315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-RB | 2906 | CG10120-RB | 246..1392 | 37..1187 | 5145 | 97.3 | Plus |
| Men-RA | 2767 | CG10120-RA | 169..1253 | 99..1187 | 4835 | 97.2 | Plus |
| Men-RC | 2364 | CG10120-RC | 1..850 | 334..1187 | 3660 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12719402..12720028 | 724..98 | 3135 | 100 | Minus |
| 3R | 32079331 | 3R | 12714731..12715134 | 1131..722 | 1380 | 95.2 | Minus |
| 3R | 32079331 | 3R | 12722136..12722197 | 98..37 | 310 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2455 | 474..598 | 176 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2352 | 507..547 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6816 | 517..598 | 132 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2413..2476 | 148..211 | 131 | 67.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3276..3322 | 168..214 | 127 | 74.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1159 | 475..552 | 127 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6809 | 475..550 | 126 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6788 | 517..550 | 125 | 85.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6886 | 517..599 | 125 | 63.9 | Plus |
| accord2 | 7650 | accord2 QBERT 7650bp | 4379..4444 | 234..168 | 125 | 69.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2593..2658 | 485..547 | 124 | 69.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 524..577 | 513..565 | 123 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2352 | 180..216 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2432 | 474..546 | 121 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6829 | 475..549 | 121 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1551..1633 | 517..596 | 120 | 62.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1036 | 517..573 | 120 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2420 | 179..218 | 119 | 77.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1092..1160 | 148..216 | 119 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1178 | 517..592 | 118 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2401 | 187..211 | 116 | 96 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..6905 | 488..550 | 116 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6787 | 144..218 | 115 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2451..2557 | 517..624 | 114 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6766 | 180..218 | 114 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6808 | 180..218 | 114 | 76.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7982 | 520..547 | 113 | 89.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9426 | 520..547 | 113 | 89.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1088 | 513..547 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1548..1578 | 517..547 | 110 | 83.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6854 | 488..547 | 110 | 68.9 | Plus |
FMO03315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:27 Download gff for
FMO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 349..1507 | 37..1198 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:17 Download gff for
FMO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 246..1404 | 37..1198 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:05 Download gff for
FMO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-RB | 246..1404 | 37..1198 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:05 Download gff for
FMO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12714661..12715132 | 724..1198 | 92 | <- | Minus |
| 3R | 12719403..12720027 | 99..723 | 100 | <- | Minus |
| 3R | 12722136..12722197 | 37..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:17 Download gff for
FMO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8540383..8540854 | 724..1198 | 92 | <- | Minus |
| arm_3R | 8545125..8545749 | 99..723 | 100 | <- | Minus |
| arm_3R | 8547858..8547919 | 37..98 | 100 | | Minus |
