FMO03316.5prime Sequence
1225 bp (1014 high quality bases) assembled on 2008-07-09
> FMO03316.5prime
TATAGCATACATAAAACGAAGTTATCAGTCGACATGGATTCCGATTTGTA
CGATGAGTTTGGCAACTATATTGGCCCCGATTTAGACAGCGACGAGGAAG
ATGAGCAAAGTATTTATGGGCAACCCGATGTGCAGGATGACCCAGAGGAC
GCCATGGACGAGGACGAGGTGGAGCCACAGGAGGACGAGGACAAGGAGGT
GACCGCCGTGGTTTTGCACGAGGACAAACGCTACTATCCGTCAGCAGTTG
AGGTCTACGGCCCGGATGTGGAGACCATTGTCCAGGAGGAGGACGCCCAG
CCGCTGGACAAGCCGCTTATAGAGCCAGTGAAGAAGCTCAAGTTCCAGAT
CAAGGAGCAAGACATGCAGGAGACCACCTACGACATGGAGTTCATGGCCG
ATCTCATGGACACTCCGCCGCTTATTCGCAACGTGGCTTTGGTTGGCCAC
CTGCACCACGGCAAGACCACCTTTGTCGACTGCCTCATCCGGCAGACGCA
TCCGCAATTTGAGACCATGGAGGAGCGCCAGTTGCGCTACACGGACACCC
TGTTCACGGAACAGGAACGCGGCTGCAGCATCAAGGCCACGCCGGTCACA
CTTGTCCTGCAGGATGTCAAACAGAAGAGCTACTTGCTGAACATCTTCGA
CACCCCGGGGCATGTCAACTTCTCGGACGAGGCCACCGCCGCCATGCGAA
TGAGCGATGGTGTCGTGCTGTTCATCGATGCCGCCGAGGGCGTCATGCTC
AACACGGAGCGACTGCTCAAGCACGCGGGTGCAAGAGCGCCAGGCTATCA
CCGTTTGCATAAACAAGATTGATCGCCTCATCCTGGAGCTGAATTGCCGC
CCCAGGACGCCTACTTTAAGTTGAAACACATTGTGGAGGAAGTCATGGGC
TGCTGAGCACCTATGGCGCTCCAAATGACAATCTCTTAGTTCGCCTATTT
TGGGCAACGTGTGCTTCGCCAGCCTCGTTGTACGGATTTTGTTTCCCTCT
GAATCCTTTTGCCCAGCTGATGCAGACCACCTATGGAGGGAGTGGCCTTA
CCTGAACTTGGCAAGCGCTCTGGGGGTGACATGTACTTTCAACAGTTAAA
CGCGCAAGTTCTCGAAAAACCAACCGCCAAATTCGGACAGGCAGCTTTGG
GGATCATTCGAACAATGTACAACCTGAATGCCAAGTGTGCTGGGCAAGTT
GTAGACACCACCCTATTGTCTATCC
FMO03316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4849-RA | 3123 | CG4849-RA | 147..1268 | 33..1153 | 5045 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27963860..27964530 | 146..817 | 3310 | 99.9 | Plus |
| 3R | 32079331 | 3R | 27961214..27961427 | 146..359 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 27961041..27961156 | 33..148 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 27963687..27963802 | 33..148 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 27964738..27964932 | 906..1102 | 395 | 86.9 | Plus |
| 3R | 32079331 | 3R | 27964587..27964680 | 816..907 | 370 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:34:20 has no hits.
FMO03316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:47 Download gff for
FMO03316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4849-RA | 146..1117 | 33..1003 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:35 Download gff for
FMO03316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4849-RA | 147..1118 | 33..1003 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:43 Download gff for
FMO03316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4849-RA | 147..1118 | 33..1003 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:43 Download gff for
FMO03316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27963687..27963801 | 33..147 | 100 | -> | Plus |
| 3R | 27963862..27964530 | 148..817 | 99 | -> | Plus |
| 3R | 27964589..27964680 | 818..907 | 97 | -> | Plus |
| 3R | 27964740..27964835 | 908..1003 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:35 Download gff for
FMO03316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23790462..23790557 | 908..1003 | 95 | == | Plus |
| arm_3R | 23789409..23789523 | 33..147 | 100 | -> | Plus |
| arm_3R | 23789584..23790252 | 148..817 | 99 | -> | Plus |
| arm_3R | 23790311..23790402 | 818..907 | 97 | -> | Plus |
