FMO03318.5prime Sequence
1247 bp (967 high quality bases) assembled on 2008-07-09
> FMO03318.5prime
TATAGCATACATTAAACGAAGTTATCAGTCGACATGGAGGAACTGTCCAA
GCAGCCGCCGCCACCCCCGCTGACGCAGCCGCCGCCGCCGTCGTCATCCG
TGTCCATTGAGGAGCCGCTGCCAAATGGCAAGGGAGGAGGAGCAGTAGTT
GTTAACTCGATAGCTAAGCTGCCCGAGGAGGAGCTCCTCGGCTCGGTGAC
CATGCACAATTGTCCGGGAACGCGGGCCAGTGCCCGGGTCATACAGAAGA
TGAAGCAGGACCAGACGCGCCCGATGACACCGCCGCCCAGCGAACGGGAG
CCGAACAAAAAGGAGGAGAAGGCCGCCCAAAAGACGCCCAGCCAGCTGAA
GACGGGCAGCGGGAAGACCACCTGGACGAATGTGGAGCGCAACTGCTTCT
TCGACGCCCTCAACGAATTCGGCAAGGACTTCGAGGCGGTGGCCAACTGC
ATCAATGCCAAGCTGAAGCGCCGCAATGCCAACAGCGACTATAGTTTCAA
AACCAAGGACCAAGTTCGCCAGCACTATTACCAGACCCATCACAAGATTT
GCAAATATGTGCGCTTCTCGGAGGAACTGAAAAAGCCCGCCCAGGAGTTG
TACACGCTGATCAACTACGGCGAGATGCGGCGCAAAGCTGCAGTTCCTCA
CGGAGAAGCACTTCATGAAGCTGAAGCAGCTGGTCTACCAGGGCCAAATA
ACCGTGCGTTGCAAGGGCAAGAACATTCGCATTAAGACGCCATCGTGCAA
GGCGCTCCGGCGGCTAAATCAATTGGGATGACTCACTGGAGGATATCCGG
CTGCCCAGCAAGGTGGAGGTGCTGGTGACTCTCGCCAATATGGAGGCCTT
CGGACGCGTCCAGTCACTGGCGCAAATCCACGCGGCAGGATCATAGTTCC
CGCTGCACAAGAAACTAAATCAACTTCATCAAACGTTCGAGTTACAAATG
GGCGCAGCGCCAATCAGCGTTGGCACGAGGGAGAAAGTGCATACCTTTTC
CAGCAGCCTGCCATCTGCTGCGTCACAAACATAAACACAAACAATGAACC
GAGACCCTTTACGCCGTCAGTTGGCATCGCCTGGATCCCTCAATGTGGCT
TCCAGCCGGACCGGGAGTGTGCCATCCCACCGCAACCCTTGCTCAACATC
ACTGCCTACTCTAAACAGAAATCACAATTGCTTGAACGCATACAGGAGAA
GCCAGGAGGCTTCAATGTGGCACCAACGAGAACAATTCTGTGGGACA
FMO03318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| crm-RA | 3780 | CG2714-RA | 75..1231 | 32..1198 | 4890 | 95.8 | Plus |
| crm-RB | 3837 | CG2714-RB | 132..1288 | 32..1198 | 4890 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2737922..2738464 | 574..32 | 2715 | 100 | Minus |
| X | 23542271 | X | 2737473..2737674 | 776..574 | 965 | 99.5 | Minus |
| X | 23542271 | X | 2737101..2737414 | 1097..780 | 805 | 90.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:16 has no hits.
FMO03318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:46 Download gff for
FMO03318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crm-RA | 67..1062 | 24..1024 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:51 Download gff for
FMO03318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crm-RB | 124..1119 | 24..1024 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:20 Download gff for
FMO03318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crm-RB | 124..1119 | 24..1024 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:20 Download gff for
FMO03318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2737173..2737413 | 781..1024 | 95 | <- | Minus |
| X | 2737470..2737673 | 575..780 | 99 | <- | Minus |
| X | 2737922..2738472 | 24..574 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:51 Download gff for
FMO03318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2631206..2631446 | 781..1024 | 95 | <- | Minus |
| arm_X | 2631503..2631706 | 575..780 | 99 | <- | Minus |
| arm_X | 2631955..2632505 | 24..574 | 99 | | Minus |
