FMO03319.5prime Sequence
696 bp (695 high quality bases) assembled on 2008-07-09
> FMO03319.5prime
ATACATAAAACAAATTTATCAGTCGACATGTTCGTTTACCTCAGGAAATA
GATTGCCATACCCAATAATGTGAAGCTCAATTGCATCGCTTGGAATAAGG
AGGAGGGCTACATCGCAGTGGCCGGAACGGATGGACTGCTTAAGGTCCTG
AAACTGGACCAGGCCACTCCCAACGGACAGAGCAAGGGCGGGCTGGCCGC
CGTTTCCAATTTGTCGATGAACCAGACCCTGGATGGGCACAAGGAGTCGG
TGCGGGTGGTCACCTGGAACGATGCGCAGCAGAAGCTGACCTCCTCGGAC
ACGGACGGTGTGATCATGGTGTGGATGCTGTACAAGGGATCCTGGTACGA
GGAGATGACCAACGACAGAAAGAAGTCCACGGTGGCCAGCATGAGCTGGA
CGTCGGACGGATCGCGGATCTGCATCGTCTATGAGGATGGGGCGATTATA
GTGGGCTCAGTGGATGGCAACCGCATCTTTGGCAAGGAGCTGAAGGGCAC
CCATCTGACTGGCGTGCAGTGGAGTCCGGACAATCGGCTAATCCTCTTTG
CGCTGGCCAACGGGGAGTGTCATCTGTACGATAACCAAGGCAACTTTGCT
ATGAAGCTGCACATCCAGTGCGTGAACATAAGTGGCGGCTCCTCCTCCAG
AGGTCACCGCATAGCCAGCATCTGCTGGTTCAGTGGCAGGGTCGTC
FMO03319.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oseg4-RB | 3878 | CG2069-RB | 179..847 | 28..696 | 3315 | 99.7 | Plus |
| Oseg4-RA | 4131 | CG2069-RA | 179..847 | 28..696 | 3315 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1734721..1735158 | 600..163 | 2190 | 100 | Minus |
| 3L | 28110227 | 3L | 1735403..1735516 | 163..50 | 570 | 100 | Minus |
| 3L | 28110227 | 3L | 1734566..1734661 | 696..601 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:00:29 has no hits.
FMO03319.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:48 Download gff for
FMO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg4-RA | 167..835 | 28..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:30 Download gff for
FMO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg4-RA | 179..847 | 28..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:00 Download gff for
FMO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg4-RA | 179..847 | 28..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:00 Download gff for
FMO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1734566..1734661 | 601..696 | 100 | <- | Minus |
| 3L | 1734721..1735157 | 164..600 | 100 | <- | Minus |
| 3L | 1735403..1735514 | 52..163 | 100 | <- | Minus |
| 3L | 1735566..1735589 | 28..51 | 91 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:30 Download gff for
FMO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1734566..1734661 | 601..696 | 100 | <- | Minus |
| arm_3L | 1734721..1735157 | 164..600 | 100 | <- | Minus |
| arm_3L | 1735403..1735514 | 52..163 | 100 | <- | Minus |
| arm_3L | 1735566..1735589 | 28..51 | 91 | <- | Minus |
