FMO03320.5prime Sequence
1242 bp (1011 high quality bases) assembled on 2008-07-09
> FMO03320.5prime
TTCGTATAGCATACATAATACGAAGTTATCAGTCGACATGGACTTCCACA
TACTGATCGTCATCGGTTGTGTGGTCAGCGCCTCGCTGCTCTCGTTCCTG
TTCATCAACAAGATCTTCCGGCGCAAGACTTTTGAGGAGGTGGTAGCCGA
GAAGCGTGCCCTGAGCGCCAATCTCTACAAGGCGGCCGGTGGTGCCGCTA
CCAAGAAGCCCAAGAAGAAGGAACTTAAGCGCGAAAAGAAGCAACGTCAG
CGGGAACAGCAGAGGGATGTGAACAACGAGCCGGAACCAGAGGAAGCCGA
AGACTACTCCGATGGTCAGTCGGAGGGTCAGGGCTCCGTGGCTGGCGAGG
AACCCGGTCTCTCCAAGCAGCATGTTGAATTTGAACCCGATGCAGAGGTC
CTCACTGATCAGCGACGACCCAGTAGCGTGGCTGAGAAGGAGAACCAACC
TTCTGGGGCTGGCAAAAAGGGAAAGAAGGATAAACGTAACGGAGCCAACA
ACAAGACAGCCGGAATCCTGGTCAACAAGAACGAAACTGTTGCTGTTAAG
CCTGCAGCTAACGCCGAGGAGACACCAACTTTGAATAATTTTGAAACCAA
GATCCCCAAGGATGTGGTGGAGCTGAAGAAGCAAGAGCAAAAGGAACGCA
AAGAAGACAACAACAACAAGCAGCAAAGTCAGAAAAAGATCGCCGGAGGC
AATGTGTCCAAGAAGGAGAAGGTCGTAGCTGTCGAAACAGAGGCACCCGT
AGTGACCAAGCAGATCCTCAAGCAACAGCAGCAGCAGCAGAATGGCTCAC
CCAAAACGCAACACAACCAGGCCAAACAACAAAACCAAGCAGCAGCAGCA
AAACAAGAAAACAGAATCAAAAGGAAACCCTAACGGGTAAGGATTTGGCT
CATGCTTTTGGATAAACTGGCCGATCACAGAACCAGACCATTTGGTGTCA
ACGCTTTGATGAACGTATTTTTCTCGTGCCGAGCTAATCGCTCAGAGATC
AAGATACTCATCGACTATCTGCTAAACAGGCACAGGATATGCCCGCTTCG
CACTCTTGAAGTGTTCGGATGACATCTTGCCAAACCTCAGCCGTCAGCTG
GGAGAGAGAAAAGCTGTTGGCGAGGGACAGGAGGCCTCATCGGGATTCAG
CTAGCCTTCCGAACTTACGCCAGAAGTTTACACGGACGCGCCTCGATGTC
ATGTCCTGAACCAGCCTTATTATACGCATAATATGTAGTCAA
FMO03320.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alt-RI | 3834 | CG18212-RI | 118..1302 | 38..1220 | 5090 | 96.2 | Plus |
| alt-RH | 3909 | CG18212-RH | 289..1473 | 38..1220 | 5090 | 96.2 | Plus |
| alt-RB | 3282 | CG18212-RB | 116..1300 | 38..1220 | 5090 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17677021..17678120 | 1138..38 | 4715 | 97.4 | Minus |
Blast to na_te.dros performed 2014-11-28 20:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2436 | 734..868 | 194 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6921 | 658..853 | 179 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6886 | 736..876 | 164 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2468 | 736..876 | 158 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6903 | 727..867 | 154 | 62.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1173 | 759..872 | 145 | 66.4 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4595 | 769..858 | 136 | 66.7 | Plus |
FMO03320.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:50 Download gff for
FMO03320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alt-RG | 208..1324 | 38..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:34 Download gff for
FMO03320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alt-RB | 116..1232 | 38..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:30 Download gff for
FMO03320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alt-RB | 116..1232 | 38..1153 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:30 Download gff for
FMO03320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17677004..17678120 | 38..1153 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:34 Download gff for
FMO03320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13502726..13503842 | 38..1153 | 97 | | Minus |
