FMO03322.5prime Sequence
1259 bp (1024 high quality bases) assembled on 2008-07-09
> FMO03322.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTACGCAACTGG
AACTGACAACGCGATGACCTCCGGCATCAGCGGCCAAACCAATAACTCTA
ACAGTGCATCCAACGAGATGCAGCCAACCACATCAACGCCTACTGCAGCC
CACAAGGAGGCCACATCAACGGCCACGACGACGGCGACATACGCCAATGG
CAATCCCAATTCTAACGCCAATCCCAGCCAGAGCCAGCCGTCCAATGCGC
TGTTTTGCGAGCAGGTGACCACAGTGACAAATCTCTTCGAGAAGTGGAAC
GACTGCGAGCGAACCGTCGTGATGTACGCGCTGCTCAAGCGGCTGCGCTA
CCCGAGCCTCAAGTTTCTACAGTATTCTATCGACAGCAACCTGACCCAGA
ACCTGGGCACCTCCCAGACCAATCTGAGCAGCGTGGTTATTGACATCAAT
GCCAACAATCCGGTGTACCTGCAGAATCTACTCAACGCCTACAAGACGTT
CCAGCCATGTGACCTGCTCGACGCCATGTCCTCCTCGTCGTCCGACAAGG
ACTCGATGCCATGCTACGGCAGTGACTTCCAGATCACCACATCGGCGCAG
TGTGACGAGCGGAAGCTGTATGCCCGCAAGGAGGACATTCTGCATGAAGT
ACTGAACATGCTGCCTCTGCTGAAGCCGGGCAATGAGGAGGCCAAGCTTA
TCTACCTGACCCTTATACCAGTTGCCGTCAAGGACACCATGCAGCAAATT
GTGCCCACGGAGTTGGTGCAGCAGATCTTCTCGTACCTTACTCATCCATC
CAGCTATCACCAGCGAGGACAGACGTTCGCTCAACATTTGGCTGCGTCAC
TGGGAGGATCATATCCAAGCGGCTGCGGCGGGCCTGACAAATCGCAGTTA
CTTCCTGCAGCCCCTCGCCGCACTGGGTCGCTGGTGGTAGCCTCAACAGG
CAAGGGGTAGCTGTTCCTCTTCGGCGACCAGCTCTTCGACAGCATCCTGT
TCGTCGGTGGCCTCATCCTCGTTGGGGCCCCGCAAGCGGAAGCGTTCCTC
AGGCACCAACGACTGGCAAACGATCGCCCGCCAGCAGCAATTGGAAAAAC
AATTGGCCGGGGGATGGCTGGGCAATGGGAGGGGGGCAAGTCTCAGCCGG
TTCGAATCAATTCCACTCCTCGTGATATATCCTTAAGGCATAACCTGAAA
CAGAATAACTCCTAGATCAAACGGTTCTTGACTGCGTGCCTGTGGGAGAA
GGGGGCAGC
FMO03322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smg-RE | 4465 | CG5263-RE | 283..1380 | 30..1128 | 5035 | 97.7 | Plus |
| smg-RD | 4927 | CG5263-RD | 336..1433 | 30..1128 | 5035 | 97.7 | Plus |
| smg-RC | 4562 | CG5263-RC | 380..1477 | 30..1128 | 5035 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8994374..8995471 | 1128..30 | 4830 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:08 has no hits.
FMO03322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:24 Download gff for
FMO03322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smg-RC | 374..1431 | 23..1084 | 98 | -> | Plus |
| smg-RC | 1815..1823 | 1085..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:01 Download gff for
FMO03322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smg-RC | 374..1431 | 23..1084 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:28 Download gff for
FMO03322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smg-RC | 374..1431 | 23..1084 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:28 Download gff for
FMO03322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8994426..8995477 | 23..1079 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:01 Download gff for
FMO03322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8987526..8988577 | 23..1079 | 98 | | Minus |
