FMO03324.5prime Sequence
1237 bp (1022 high quality bases) assembled on 2008-07-09
> FMO03324.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTTGTGGTGGC
CCATCGTCGTATTCGTATAACAGGTCAGGTGGTAGAGGACGTGCCACCTC
CTAAGCCCGCTGAAGATCAAAGCACTGATCAAGCGGATGCGGCACCTATA
AAATCAAGATCCGACCCAGCCCGAAAGCCCCGTGGCCGAATTCCCAGGAG
TCGGACCGGAAAATCACGTGAATCGGCGGCTGCTGAAGAACTTATACAAA
ACCAGACTCTGGAGCCGCCACTGAAATCAGGCAAAGTCGAGTCATCGAGC
TTGCCAAAGCCTCCAACAGAAGAAAAGATAGTGGAACCTGAGACTGGTGC
CAAAGAAAATGTTAATCAATCTGCGCCCAGCGCCCAACCTGTTCTTATTG
TTGAAGTGGAGAACGTAAAGCAACCGATCTATAAACAAACGGAAGAGGTG
AAGGCATTAACTCAGGAGATAATCAAGACTCTTCGGGACATAATCACAAT
GAATCCCTTGTATAGAGAGAGTCTACAGCAGATGCTGCACCAAAATCAAC
GAGTTGTCGACAACCCCATTTATCTGTGCGATTTAGGAGCATCCCTTTCC
GCTGGAGAACCAGCTGAGCTGCAAAAAATTCTTGAGGAAACAGATATCCC
AGAACGTCTACAATTGGCCTTAACTTTACTCAAAAAGGAGTTGGAACTCT
CCAGGCTCCAACAAAAAATTGGACGCGAAGTAGAGGAAAAAGTCAAGCAG
CAACATCGCAAATATATACTCCAGGAACAGTTGAAAGTCATCAAAAAAGA
ACTGGGCATCGAAAAGACGACAAGGATGCCATTGGTGAAAAGTACCGCGA
AAAGCTGATGGATAAAGTGGTTCCCGAAGCTATTATGACGGTTATTGATG
AAGAACTCACCAAGCTGAACTTCCTGGAGAGTCATAAGTTCCGAGTTTAA
TGTAACTCGCAATTACCTCGACTGGCTTACTTCCCTACCTTGGGGCGTAA
TCAGCACGAAATCTCTGCCTGGAGATGGCACTGAAACACTAACGACGATC
CTACGGATGAGAATTCAGAAGCGTATTTAAAATTATGGCCGTCAGTTCCC
TCAAGGACCTCTAACCAGGGCAAGATCTTGTGCTTCCATGACCCCTGTGG
TGGCAAACAAGCATAGCAAGTCAATGGACAGCTCTTTGGATCTGGCATTT
ATCCTCTCTCGTGCCTTTGATATGAGTGGGCGCGAGC
FMO03324.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lon-RA | 3707 | CG8798-RA | 639..1786 | 36..1169 | 5105 | 97.3 | Plus |
| Lon-RC | 3761 | CG8798-RC | 766..1840 | 109..1169 | 4740 | 97.1 | Plus |
| Lon-RC | 3761 | CG8798-RC | 639..712 | 36..109 | 370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19610802..19611208 | 515..109 | 2035 | 100 | Minus |
| 3L | 28110227 | 3L | 19610252..19610556 | 950..646 | 1400 | 98.7 | Minus |
| 3L | 28110227 | 3L | 19610615..19610746 | 645..514 | 660 | 100 | Minus |
| 3L | 28110227 | 3L | 19611325..19611398 | 109..36 | 370 | 100 | Minus |
| 3L | 28110227 | 3L | 19609989..19610193 | 1140..946 | 365 | 86.4 | Minus |
Blast to na_te.dros performed 2014-11-28 19:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 978..1073 | 403..497 | 143 | 64.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 3722..3797 | 404..479 | 128 | 63.2 | Plus |
FMO03324.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:13 Download gff for
FMO03324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8798-RA | 620..1791 | 24..1180 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:34 Download gff for
FMO03324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lon-RA | 626..1797 | 24..1180 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:13 Download gff for
FMO03324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lon-RA | 626..1797 | 24..1180 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:13 Download gff for
FMO03324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19610252..19610556 | 646..950 | 98 | <- | Minus |
| 3L | 19610615..19610744 | 516..645 | 100 | <- | Minus |
| 3L | 19610802..19611207 | 110..515 | 100 | <- | Minus |
| 3L | 19611325..19611411 | 24..109 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:34 Download gff for
FMO03324.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19603352..19603656 | 646..950 | 98 | <- | Minus |
| arm_3L | 19603715..19603844 | 516..645 | 100 | <- | Minus |
| arm_3L | 19603902..19604307 | 110..515 | 100 | <- | Minus |
| arm_3L | 19604425..19604511 | 24..109 | 94 | | Minus |
