FMO03325.5prime Sequence
1232 bp (1048 high quality bases) assembled on 2008-07-09
> FMO03325.5prime
TTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGAAATTCGCCG
AGCACCTGTCGGCGCACATAACGCCCGAGTGGCGCAAACAATACATTAAC
TATGAGGAAATGAAGGCCATGCTGTATTTGGCCGTGGAGGAGGCGCCATC
GGTGGAGAGCGTCGAGGACGACGTGCTGAAGCGGCACTTCGCCAATTTCG
ATGAGAACTTCTTTCACTACTGCGACAAGGAGCTAAAGAAGATCAATACG
TTCTACTCGGAGAAGCTGGCGGAGGCCACGCGAAAGTTTGCCACCCTGAA
TGCCGAACTGAAGACCTCCATCGAGGAGTCGGAGCGAAGTGCCAAGAAGT
CCAAGGGACACAAACGACATGCCGCCTTGCCGGATCGCAAGGCGCGCGAG
CTGAAGTTGGCCTTCAGTGAGTTCTACCTGAGTCTGATCCTCCTGCAGAA
CTATCAGAATCTGAATCACACCGGCTTTCGTAAAATACTCAAGAAGCACG
ATAAACTTTTGCGTGTGGACACCGGTGCCAAATGGAGGCAGGAGTATGTG
GAGGCCTCACACTTCTTCACCAACAAGGACATCGACAACATTATCAATGA
GACGGAGACGACGGTCACCGGCGAACTGGAAGGCGGCGATCGGCAGCGAG
CGATGAAGAGATTGCGAGTACCACCGCTGGGCGAACAGCAGAGTCCATGG
ACCACGTTCAAGGTTGGCCTCTTCTCCGGCAGCTTTATAGTGCTGGTCAT
TGTGGTCGTGGTGTCGGCCATCTTCCACGAGATTAGCGGCGAGACCTCAA
GGTTACGTTCCGACTCTACCGCGGTCCCCTGCTAATCATCGAGTTCATCT
TCCTCATCGGAGTGAACATCTACGGCTGGCGGTCGTCTGGCGTTAATCAT
GTCCTGATCTTCGAGCTGGATCCGCGAAATCATCTATCCGAGCAGCATCT
CATGGAACTGGCGGCGATCTTCGGCGTTGATCTGAACACTCAGCATGCTG
AGCTTTCTGTACAGCGCCTAGCTTTGCCATTCGCTTTCATCAATCACTTA
CGCTTAGGCTGATATGGTGCTGTTTGCAATCGGTTCATGTGCTCTATCAC
GACGCACGATTCTGGGCTGTGGCGGAATACCGCACGATGTGGTTCGGCAC
CGTTTCTTTAATTGGACTCCGATTCCGTCGGATAACTCATGCCTGGGCCA
GCGGCATAGCTCAAGAATGTCCGAATGAATCG
FMO03325.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7536-RD | 3537 | CG7536-RD | 721..1845 | 37..1154 | 5210 | 98 | Plus |
| CG7536-RC | 3494 | CG7536-RC | 306..1430 | 37..1154 | 5210 | 98 | Plus |
| CG7536-RA | 3019 | CG7536-RA | 357..1481 | 37..1154 | 5210 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18080736..18081391 | 1154..506 | 2635 | 96.5 | Minus |
| X | 23542271 | X | 18081743..18082143 | 505..105 | 2005 | 100 | Minus |
| 3L | 28110227 | 3L | 5919889..5920445 | 962..404 | 400 | 72.7 | Minus |
| X | 23542271 | X | 18082218..18082288 | 107..37 | 355 | 100 | Minus |
| 3L | 28110227 | 3L | 5920582..5920753 | 276..105 | 290 | 77.9 | Minus |
| 3L | 28110227 | 3L | 5921136..5921209 | 107..34 | 265 | 90.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:04 has no hits.
FMO03325.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:15 Download gff for
FMO03325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7536-RA | 357..1485 | 37..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:39 Download gff for
FMO03325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7536-RA | 357..1485 | 37..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:47 Download gff for
FMO03325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7536-RA | 357..1485 | 37..1159 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:47 Download gff for
FMO03325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18080732..18081391 | 506..1159 | 96 | <- | Minus |
| X | 18081743..18082141 | 107..505 | 100 | <- | Minus |
| X | 18082219..18082288 | 37..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:39 Download gff for
FMO03325.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17974765..17975424 | 506..1159 | 96 | <- | Minus |
| arm_X | 17975776..17976174 | 107..505 | 100 | <- | Minus |
| arm_X | 17976252..17976321 | 37..106 | 100 | | Minus |
