FMO03326.5prime Sequence
890 bp (704 high quality bases) assembled on 2008-07-09
> FMO03326.5prime
TCATACGAAGTTATCAGTCGACATGGTGGCTGCCAATTTGGAGGTGCCAA
CATCGTCATCGTCATCAGCGGCCACAAAGCGCCAGAAAGATGTTGACAAC
AAGCTAGAAAAATGCTTGAACGACATGCTAAAGTTGAAGACCAGCAGCAA
CAACAACAGCACTAGTAACAGCAATAATAATGCAATCATGTCGCATTCGC
TGACGGGCGAGCACAAAGACCCGAAGACTGCACTCGAAGGCCCCACGAGC
AGCAGCAGCAGCAGCAGCAGCAAGTACATAGGTGAATCTCAGATCCCCGT
GCCAGTTCAGCTGTACGATCCGCAGAAGCCGTTGCTGCAGCAACAGCAGC
AGCAACAAAGGATCTGCTATCCCATAGGCAAATCTAACTCTACCTCTCAG
CTACCCATGGGCGGCTATCAGCGATTGCTGCAACATCAGCAGCAACAACA
TCACCAACAGCAACAGCAGCAACATCAGGAACAGCAGCAGTATCCGCAGC
ACAAGCGACCCTTCCTCAACTGGAATAGCTTTGCATGTTCCGCCATGAAC
GGAGCGAGTGATCCCTTCATGCAGCAGCAAACATGCCTGCCCACCAGCAA
CAGCAGCATCTGCCACACAAGCTGCAGCAATCATACTCCTCGTCTCATGT
GCCCAAGCAGGCGCCCAAATCGGGACTGGCCATGTTTCTGCAGAAGAACA
CCAACAAGAGAACAAGTTTGGCCAGCCGATGCAGCAGCACCACCCGGCAT
GATGCCCCAGATGTATGGATACCAGGCGCCCCAGCAGCAATCCCAAGATA
GGCTATCCCCGCCAAGTGCCCCACTGACGCACTCGCCTCCTTCAGCTCCG
CCCAAAGGCCGACGGCCCTGCAGTTCACCTGCACATCACC
FMO03326.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doa-RY | 5756 | CG42320-RY | 2228..3099 | 23..888 | 4135 | 98.9 | Plus |
| Doa-RP | 7311 | CG42320-RP | 3783..4654 | 23..888 | 4135 | 98.9 | Plus |
| Doa-RK | 3693 | CG42320-RK | 165..1036 | 23..888 | 4135 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28909819..28910676 | 23..876 | 3980 | 99.2 | Plus |
Blast to na_te.dros performed 2014-11-28 20:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2792 | 140..630 | 335 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2659 | 308..629 | 312 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2958 | 48..509 | 279 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6470..6902 | 63..503 | 277 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7077 | 433..789 | 270 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2514 | 308..509 | 252 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2635..3025 | 140..530 | 252 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6944 | 308..520 | 246 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2664 | 132..520 | 244 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7189 | 143..636 | 240 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6951 | 248..501 | 204 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2944 | 48..635 | 196 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6545..6859 | 48..358 | 195 | 55.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6894 | 140..278 | 176 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6952 | 244..469 | 175 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6873 | 462..629 | 167 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..7009 | 140..369 | 167 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2518 | 137..278 | 152 | 60.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1161 | 127..188 | 150 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6871 | 48..180 | 145 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2527 | 28..278 | 143 | 57.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 961..1150 | 148..358 | 139 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2521 | 592..798 | 131 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2511 | 592..744 | 127 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1555..1599 | 140..184 | 126 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2838 | 138..172 | 121 | 82.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1114 | 143..185 | 118 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6703..6846 | 29..176 | 117 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1116 | 308..357 | 115 | 70 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1086..1126 | 318..358 | 115 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1542..1594 | 308..359 | 109 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6816 | 571..629 | 108 | 66.7 | Plus |
FMO03326.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:16 Download gff for
FMO03326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doa-RH | 3635..4513 | 19..890 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:27 Download gff for
FMO03326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doa-RK | 160..1038 | 19..890 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:49 Download gff for
FMO03326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doa-RK | 160..1038 | 19..890 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:49 Download gff for
FMO03326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28909814..28910692 | 19..890 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:27 Download gff for
FMO03326.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24735536..24736414 | 19..890 | 98 | | Plus |
