FMO03327.5prime Sequence
1027 bp (970 high quality bases) assembled on 2008-07-09
> FMO03327.5prime
TTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGTCTCGGATAA
AGAAGAAGGCAGATGAACATGCCTCCAGCCGCCGCAGGACTCAGATCAAT
CTGATCGAGTTCAGTTTCTTGGATCACAAGGCGGAGCTCGTGGGCCTGCT
GCAGGCCAAGAGCCGCCAGGTAGGCAGGAGTCTGGTGGAGAACGAGGCTG
ACTTCTGGAAGTTCGTGGGCAAGTACGAGGCTATGATGCGCTCCACGGGC
CAGCCCGTGCTGCCGCCTCGACTCGCGGAGGCGGAGCTGAGCAGCATGCA
GCCGTATCACCGCAGCAAGCACTTGGCATTGCGGCTGGACGCTGACGAAC
TGCTTCAGGAGGCGCGCGACCAAATGCAGTCCCAGTTTCGTCATATCTTG
CTGGTGTACTTAGACTTCCGCCAGACGGAAAAGTTCCAGCGTATCCGAAA
GCTGCGGCAGACACAACGCAATCTACCCATTGCTCGCTTCCGGAAGGACT
TGCGCGAGGCACTGGACACGTCCCGCGTGGTCATCGTGGCCGGTGACACT
GGCTGCGGCAAGTCCACACAGGTGCCCCAGTATCTCTATGACTTTGGCTA
CCGCAGCATTGCTTGCACCCAGCCGCGCCGTTTGGCCTGCGTCTCCCTGT
GCAAGCGCGTTGCGCACGAGCTGCTGGACGACTACGGCAGTCGGGTGGCA
TTCCAGATCCGATTCGAGCGCAGTCGGACGAAGCTCACCAACATCCTTTT
TCATTACGGAGGGCTTGTTGCTGCGGCAACTAGCGGTGGCCGCCAACCTA
GACCAGTACGATGCCCTGATTTTGGACAAATCCACGAGCGCAACTTATTC
GGTTGACTTTCTACTGGGTGTTACCAAGTTGCTTACTGAGGGCGCGGGCC
GCACTGAGCTGATACTCATTGTCTGCCACCATCAACGTGGAGCTTCTTCC
ACCGGCTACTTCGGCGAGGAGAGCCTCACGGGCTGGTCCAGGGGCCGGGA
CGTTTATTTCCAATCAACTGCGCTATC
FMO03327.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32533-RB | 3508 | CG32533-RB | 63..1047 | 38..1027 | 4585 | 98.3 | Plus |
| CG32533-RA | 3600 | CG32533-RA | 155..1139 | 38..1027 | 4585 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19478684..19479257 | 611..38 | 2870 | 100 | Minus |
| X | 23542271 | X | 19478213..19478624 | 1027..611 | 1430 | 95.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:17:38 has no hits.
FMO03327.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:48 Download gff for
FMO03327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32533-RA | 47..1040 | 29..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:49 Download gff for
FMO03327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32533-RA | 146..1139 | 29..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:38 Download gff for
FMO03327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32533-RA | 146..1139 | 29..1027 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:38 Download gff for
FMO03327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19478213..19478623 | 612..1027 | 95 | <- | Minus |
| X | 19478684..19479266 | 29..611 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:49 Download gff for
FMO03327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19372246..19372656 | 612..1027 | 95 | <- | Minus |
| arm_X | 19372717..19373299 | 29..611 | 99 | | Minus |
